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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataaaaacctttctctctgtcaaacacaccaatttctctctctctctctctctctttttcctttctggggttttaaggttgtttgcttttgtatctcaatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG

Basic information

species Glycine max
transcript GLYMA06G14050.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192303|gb|HO036385.1|HO036385
EST:     ATCCGAAGAATATTACCCCCTTCCATCTCTCTCTATAACATTATTCATAA                         GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
genomic: ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAAgtaagataaa ... caatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
EST: gi|22541215|gb|BU091058.1|BU091058
EST:     ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAA                         GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
genomic: ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAAgtaagataaa ... caatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
EST: gi|208309123|gb|GE108851.1|GE108851
EST:     ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAA                         GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
genomic: ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAAgtaagataaa ... caatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
EST: gi|24135747|gb|BU926257.1|BU926257
EST:     ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAA                         GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
genomic: ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAAgtaagataaa ... caatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
EST: gi|207707299|gb|GD687707.1|GD687707
EST:     ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAA                         GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
genomic: ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAAgtaagataaa ... caatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
EST: gi|22539945|gb|BU089788.1|BU089788
EST:     ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAA                         GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
genomic: ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAAgtaagataaa ... caatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
EST: gi|254324020|gb|GR840445.1|GR840445
EST:     ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAA                         GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
genomic: ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAAgtaagataaa ... caatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
EST: gi|151399022|gb|EV268893.1|EV268893
EST:     ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAA                         GTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
genomic: ATCCGAAGAATATTACCCTCTTTCATCTCTCTCTATAACATTATTCATAAgtaagataaa ... caatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttttcctttctggggttttaaggttgtttgcttttgtatctcaatctccagGTTCAGTTTGATCTTATGTCAATGAAGGATTTTTAGACAAAACCCAG
                                                tctcc  CT-rich tract
                                   ttttgtat  TA-rich tract