1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgtcatagctctttcccttttaattggcaagtacatgctcttattctcactctcattcattcaagGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCACAAATTGGCCACTATATTGGAATTG
species | Glycine max |
transcript | GLYMA06G13240.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACG GTGTGCGACTTGTACTGTGGAGATGCCGACGEST: gi|298188464|gb|HO035157.1|HO035157
genomic: ATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACGgttcgtcata ... ttcattcaagGTGTGCGACTTGTACTGTGGAGATGCCGACG
EST: ATTTCGCCAAAATGGCTCTCATCAACGTCTTCGTTCACCCCTACGCCACG GTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCAEST: gi|151396980|gb|EV266853.1|EV266853
genomic: ATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACGgttcgtcata ... ttcattcaagGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCA
EST: ATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACG GTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCA
genomic: ATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACGgttcgtcata ... ttcattcaagGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCA
ctttcccttttaattggcaagtacatgctcttattctcactctcattcattcaagGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCACAAATTGGCCACTATATTGGAATTG
ttctcac putative branch site (score: 2)
ctcttattctcactct CT-rich tract
ttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtcatagctctttcccttttaattggcaagtacatgctcttattctcactctcattcattcaagGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCACAAATTGGCCACTATATTGGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT