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...cactttactctgtaagtgctgcgatttttttttttttttaatttatgaacttaaagatggtgggataattttcttttcgtgacaactcatgtgcttatagTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCCGAAGACTATGGATGGGAAGGCGAGTAA
species | Glycine max |
transcript | GLYMA06G13210.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCA-T--TC-- -AT-CAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCGEST: gi|207755435|gb|GD726558.1|GD726558
genomic: TTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGgcaagcaacg ... gtgcttatagTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCG
EST: TTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAG TATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCGEST: gi|192325742|gb|FK015099.1|FK015099
genomic: TTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGgcaagcaacg ... gtgcttatagTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCG
EST: TTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCA-T--TC-- -AT-CAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCG
genomic: TTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGgcaagcaacg ... gtgcttatagTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCG
tgaacttaaagatggtgggataattttcttttcgtgacaactcatgtgcttatagTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCCGAAGACTATGGATGGGAAGGCGAGTAA
ataattttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactttactctgtaagtgctgcgatttttttttttttttaatttatgaacttaaagatggtgggataattttcttttcgtgacaactcatgtgcttatagTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCCGAAGACTATGGATGGGAAGGCGAGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - -ctctgta
- - - - - - - -gtgctgc
- - - - - - - - - - - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactca