1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttaccctattgttgttgctatggataagttgctcttttttttttggtcgatcattggagtatctaactgtggatgtctctcttgtttttactatttcagGAGTAGGCTGTGAGATTTTGAGGTTCATGAAGAAGCTATTTACTGTCCTGTGACGGTTGCGCGACACTGATTTGTTGAATTCTACCTTGCTTTTGAACTA
species | Glycine max |
transcript | GLYMA06G13200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAATCATTCACCTCTTCTTCACGCTCTCTGCTTCCTTACTCCTCTTCCG GAGTAGGCTGTGAGATTTTGAGGTTCATGAAGAAGCTATTTACTGTCCTGTEST: gi|209708135|gb|BW671151.1|BW671151
genomic: ACAATCATTCACCTCTTCTTCACGCTCTCTGCTTCCTTACTCCTCTTCCGgtactctttt ... actatttcagGAGTAGGCTGTGAGATTTTGAGGTTCATGAAGAAGCTATTTACTGTCCTGT
EST: ACAATCATTCACCTCTTCTTCACGCTCTCTGCTTCCTTACTCCTCTTCCG GAGTAGGCTGTGAGATTTTGAGGTTCATGAAGAAGCTATTTACTGTCCTGT
genomic: ACAATCATTCACCTCTTCTTCACGCTCTCTGCTTCCTTACTCCTCTTCCGgtactctttt ... actatttcagGAGTAGGCTGTGAGATTTTGAGGTTCATGAAGAAGCTATTTACTGTCCTGT
ggtcgatcattggagtatctaactgtggatgtctctcttgtttttactatttcagGAGTAGGCTGTGAGATTTTGAGGTTCATGAAGAAGCTATTTACTGTCCTGTGACGGTTGCGCGACACTGATTTGTTGAATTCTACCTTGCTTTTGAACTA
atctaac putative branch site (score: 2)
tctctcttgtttttac putative PPT
ttgtttttactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaccctattgttgttgctatggataagttgctcttttttttttggtcgatcattggagtatctaactgtggatgtctctcttgtttttactatttcagGAGTAGGCTGTGAGATTTTGAGGTTCATGAAGAAGCTATTTACTGTCCTGTGACGGTTGCGCGACACTGATTTGTTGAATTCTACCTTGCTTTTGAACTA
- - -cctattg
- - - - - - -tgttgct
- - - - - - - - - - - - - - gttgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgtgg