Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttaagaccctttcagttttacatgtgtttctctcacttttttttttctctatatccttgacttctgaacttgtggttcctcttctttgttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT

Basic information

species Glycine max
transcript GLYMA06G12740.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12740.4 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g15330.t01 (Vitis vinifera), 3'ss of exon 1
--------------------------gtaggtttaagaccctttcagttttacatgtgtttctctcacttttttttttctctatatccttgacttctgaacttgtggttcctcttctttgttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
                           |||   | ||     |||   |||| || | ||| | | ||  || |||| || | |  | ||   |  |    || || | | |    ||  |||  ||||| |||||| |||||||||||||||||||||||||| |
gtgggtatttttttatttccatcaagatagtcatcagctttgttcttgtttagattttttttttttacccttgtttt-ctttctgccttttcttggtttgtttttgat-ctttgaattatttgaaacagGAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197426|gb|HO044905.1|HO044905
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|209700762|gb|BW683045.1|BW683045
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298168790|gb|HO009720.1|HO009720
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298171821|gb|HO021413.1|HO021413
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|192326194|gb|FK016986.1|FK016986
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298191089|gb|HO038568.1|HO038568
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298190375|gb|HO032496.1|HO032496
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|298175722|gb|HO018319.1|HO018319
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
EST: gi|151413261|gb|EV283069.1|EV283069
EST:     AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTG                         GGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
genomic: AAGTTGTTCAAAGGCCATGGATGTTGCACATTTTTTGTTTGGAATCTTTGgtaggtttaa ... gttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctctatatccttgacttctgaacttgtggttcctcttctttgttggtacagGGAATGCTTCCGCTCTGTTCCTCTTCTTGGCTCCAGT
            ccttgac  putative branch site (score: 4)
                                 ttcctcttctttgtt  putative PPT
     tctatat  TA-rich tract