Sequence
atgc intronic sequence ATGC exonic sequencegttctacacttcgattctacctcttcttcttcttttttgttgttgttcaacttttcaccgttgagttgaatctttgttcgtagATGTATGTTACTCCTCCAGATACAGATGTTTATTCAGTTCCCAAGGTTCTCGCTCCAATGCCGCAGAAG
Basic information
species | Glycine max |
transcript | GLYMA06G12370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G12370.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G21600.1 (Arabidopsis thaliana), 3'ss of exon 1
---------gttctac--acttcgatt--ctacctcttcttcttcttttttgttgttgttcaacttttcaccgt----tgagttgaatctttgttcgtagATGTATGTTACTCCTCCAGATACAGATGTTTATTCAGTTCCCAAGGTTCTCGCTCCAATGCCGCAGAAG
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gtgtgtgaattcccagtgactctaattgctcatttcttcgatttctctagagtctgtgctcattcttcaattgtaaattgttttgtgtgggtggctgcagATGTATGTTACTCCTCCGGATACAGATATTTACTCAATTCCGAGAGTTCTTGCACCGATGCCTCAAAAG
upper sequence: GLYMA06G12370.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g01770.t01 (Vitis vinifera), 3'ss of exon 1
gttctacacttcgattctacctcttcttcttctt----ttttgttgttgttcaa------cttttcaccgttgagttg------aatctttgttcgtagATGTATGTTACTCCTCCAGATACAGATGTTTATTCAGTTCCCAAGGTTCTCGCTCCAATGCCGCAGAAG
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gttagtttttctgattttctcgtttttttagatgagaattgtgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtagATGTATGTTACTCCTCCGGACACTGATGTGTACGCCATTCCAAGGGTTCTTGCGCCAATGCCGCAGAAG
upper sequence: GLYMA06G12370.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ25581 (Selaginella moellendorffii), 3'ss of exon 1
gttctacacttcgattctacctcttcttcttcttttttgttgttgttcaacttttcaccgttgagttgaatctttgttcgtagATGTATGTTACTCCTCCAGATACAGATGTTTATTCAGTTCCCAAGGTTCTCGCTCCAATGCCGCAGAAG
||| | || ||||| | | |||| | ||||| | || |||||||||| || ||||| ||||| |||||||||||| | ||||||||| ||| ||||||| || ||
---------------------------gtaagtttaaagctggtgttcg--ctgccttcgtttggctgaatggatcttt-cagATGTATGTCACACCTCCGGATACTGATGTTTATTCAATCCCCAAGGTTATCGGGAAAATGCCGAAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcttttttgttgttgttcaacttttcaccgttgagttgaatctttgttcgtagATGTATGTTACTCCTCCAGATACAGATGTTTATTCAGTTCCCAAGGTTCTCGCTCCAATGCCGCAGAAG
tctttgttc CT-rich tract
tttttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctacacttcgattctacctcttcttcttcttttttgttgttgttcaacttttcaccgttgagttgaatctttgttcgtagATGTATGTTACTCCTCCAGATACAGATGTTTATTCAGTTCCCAAGGTTCTCGCTCCAATGCCGCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG