1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttgataattgaagtatttaaattgtatattaagtaatttatttaatacaaaactaattattataattctaattttcataattaaatatttgtgttgcagGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAATGGATGAAGCCAGAAAAG
species | Glycine max |
transcript | GLYMA06G12010.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAG GTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAAEST: gi|213616764|gb|DB971261.1|DB971261
genomic: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAGgtactactac ... tgtgttgcagGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAA
EST: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAG GTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAAEST: gi|308098235|gb|HO759976.1|HO759976
genomic: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAGgtactactac ... tgtgttgcagGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAA
EST: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAG GTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAAEST: gi|213595059|gb|DB971862.1|DB971862
genomic: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAGgtactactac ... tgtgttgcagGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAA
EST: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAG GTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAAEST: gi|254317849|gb|GR826833.1|GR826833
genomic: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAGgtactactac ... tgtgttgcagGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAA
EST: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAG GTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAAEST: gi|213591368|gb|DB955716.1|DB955716
genomic: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAGgtactactac ... tgtgttgcagGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAA
EST: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAG GTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAA
genomic: CTCTTCGTTCCGACCTAGCCAAGCCTCCACTCGAAACCATCGTCTACGAGgtactactac ... tgtgttgcagGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAA
atacaaaactaattattataattctaattttcataattaaatatttgtgttgcagGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAATGGATGAAGCCAGAAAAG
ttctaat putative branch site (score: 2)
aaactaattattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgataattgaagtatttaaattgtatattaagtaatttatttaatacaaaactaattattataattctaattttcataattaaatatttgtgttgcagGTTGGTATGTTTAAAAACTCATGTGAAGTCATACTGAAGGAATTGAAACAATGGATGAAGCCAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - caaaact