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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcagcgatacaacttttagcatttttgttccttttacttctaattatataatttcttcctttgagaccctgtctttttctttcttcgctgctaacgttaccgtttgtctctcatgcagGTTAAAGTAGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCTCGGACTTCACTTCACTTCAATTAGGTTGTCTCGCGACGTCAGGCTTTAC

Basic information

species Glycine max
transcript GLYMA06G10050.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193450049|gb|FK412589.1|FK412589
EST:     CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAG                         GTTAAAGTAGTTTCGATTT
genomic: CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAGgtgctcagcg ... tctcatgcagGTTAAAGTAGTTTCGATTT
EST: gi|209716167|gb|BW668680.1|BW668680
EST:     CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAG                         GTTAAAGTAGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCT
genomic: CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAGgtgctcagcg ... tctcatgcagGTTAAAGTAGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCT
EST: gi|208335785|gb|GE133758.1|GE133758
EST:     CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAG                         GTTAAAGTGGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCT
genomic: CTCTGTCTCTCCTCGTTTCGTACAAGTGAAACTTTCCGAGCTTAGTTCAGgtgctcagcg ... tctcatgcagGTTAAAGTAGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaccctgtctttttctttcttcgctgctaacgttaccgtttgtctctcatgcagGTTAAAGTAGTTTCGATTTGTTTATATGATGTCGTGCTCATCGCGTGACCTCGGACTTCACTTCACTTCAATTAGGTTGTCTCGCGACGTCAGGCTTTAC
                         tgctaac  putative branch site (score: 1)
                                       tttgtctctc  putative PPT
          tttttcttt  TA-rich tract