1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cattatattttggtttgatttgatgattgcctagatagttgtattattgttatttttgctttctatgaggttctttaatgataaaatctgtgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAAGGCCAGACTCTCGATGACCTGAGTGAGGCTTTACTGGAAGATTGTGCT
species | Glycine max |
transcript | GLYMA06G08640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAEST: gi|298183696|gb|HO028909.1|HO028909
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAEST: gi|298164673|gb|HO014318.1|HO014318
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|298173543|gb|HO016879.1|HO016879
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: AAGTTCGAGAACGAGGGACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAEST: gi|151411303|gb|EV281114.1|EV281114
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: GGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAEST: gi|151412239|gb|EV282051.1|EV282051
genomic: GGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCACGTCTATGTCAGGCTGCACAAEST: gi|6455553|gb|AW186236.1|AW186236
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: AAGT-CGAGAACTAGGACCTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAEST: gi|58016161|gb|CX702903.1|CX702903
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: AAGTTCGAGANCGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATG-TGATAAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAEST: gi|151394766|gb|EV264637.1|EV264637
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGAT-AAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACA
EST: AGGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAEST: gi|58015274|gb|CX702016.1|CX702016
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAEST: gi|18734019|gb|BM527940.1|BM527940
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAEST: gi|298168083|gb|HO013346.1|HO013346
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
EST: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTG GTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
genomic: AAGTTCGAGAACGAGGAACTCATCAAATACGGTTTTCCCGAAGACATCTGgtaaccctaa ... tgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAA
attgttatttttgctttctatgaggttctttaatgataaaatctgtgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAAGGCCAGACTCTCGATGACCTGAGTGAGGCTTTACTGGAAGATTGTGCT
ctttaat putative branch site (score: 4)
ttctttaatgataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattatattttggtttgatttgatgattgcctagatagttgtattattgttatttttgctttctatgaggttctttaatgataaaatctgtgtattgtagGTTCCATGTTGATAAAATGTCTTCAGCCCATGTCTATGTCAGGCTGCACAAAGGCCAGACTCTCGATGACCTGAGTGAGGCTTTACTGGAAGATTGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - -tgatttg
- - - - - - - - - - - -tgattgc