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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactcattctccttcccaaaccaatcccaaattaatttagggttttcgttttttttctttttcttttcttttgaccgtttctttctctgggcaattacacgcttcttttgtttgaggattgagattcgattcttcctgttgctttgggaagtaatgtgtttgtttattttttcctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATAATGTTTACGTGTGTCGCTCTGGATCG

Basic information

species Glycine max
transcript GLYMA06G08260.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08260.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os06g04800.1 (Oryza sativa), 3'ss of exon 1
gtacactcattctccttcccaaaccaatcccaaattaatttagggttttcgttttttttctttttcttttcttttgaccgtttctttctctgggcaattacacgcttcttttgtttgaggattgagattcgattcttcctgttgctttgggaagtaatgtgtttgtt-tattttttcctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATAATGTTTACGTGTGTCGCTCTGGATCG
                                                                    ||  |   | ||          |  |   |     |||   | || |||          |    || ||||  ||  |||       | ||  |||||| | |  | |    | | |||| ||||||| || ||||| ||||| |||||||| || || || ||||| ||||| ||||| || ||||||||||| 
--------------------------------------------------------------------ttgatccaatcgaaatcaatattaagt--tggtgtgctctgtctgcttg----------tctattttttccctttaattta------attgcctttgttatgtggtgttaattcttagGAATGTATGTGGCGAACCGTGCATCTGACAAAATTACTCAACTGACTGACAATGTGTACGTCTGCCGCTCTGGATCT

upper sequence: GLYMA06G08260.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0008g02850.t01 (Vitis vinifera), 3'ss of exon 1
gtacactcattctccttcccaaaccaatcccaaattaatttagggttttcgttttttttctttttcttttcttttgaccgtttctttctctgggcaattacacgcttcttttgtttgaggattgagattcgattcttcctgttgctttgggaagtaatgtgtttgtttattttttcctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATAATGTTTACGTGTGTCGCTCTGGATCG
                                                                              |          |       ||  | ||    ||   || | | |||  | |    | |  |  ||| | |  || | ||| | ||| | |     || ||     |||| ||||||| || ||| ||||||||||||||||||||||||| || |||||||| ||| | |||||||||||||||
------------------------------------------------------------------------------caacctagaacccaatt--ttgaatgcaagattctgttaaagtttggaacttttctgtagcgtttgatgtttgatgcaatatatttatgttggggttgct-----agGAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196281|gb|HO044672.1|HO044672
EST:     TACTTACAGCGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|192293857|gb|FG986066.1|FG986066
EST:     GGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: GGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|254326872|gb|GR836481.1|GR836481
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|151403047|gb|EV272860.1|EV272860
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|120529083|gb|EH257217.1|EH257217
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|151400109|gb|EV269923.1|EV269923
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|7587840|gb|AW703648.1|AW703648
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|151393354|gb|EV263229.1|EV263229
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|151405592|gb|EV275406.1|EV275406
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|298163452|gb|HO012185.1|HO012185
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAGATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|298186101|gb|HO036734.1|HO036734
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|192327794|gb|FK022073.1|FK022073
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|308098837|gb|HO760678.1|HO760678
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|27424900|gb|CA936420.1|CA936420
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|15337215|gb|BI497871.1|BI497871
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|13478110|gb|BG507722.1|BG507722
EST:     CTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: CTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|16997060|gb|BM086432.1|BM086432
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|27427298|gb|CA938818.1|CA938818
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|192333615|gb|FK025432.1|FK025432
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|10231723|gb|BE800611.1|BE800611
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|15815710|gb|BI787985.1|BI787985
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|254321189|gb|GR827638.1|GR827638
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|58017005|gb|CX703747.1|CX703747
EST:     GAACCAGCACTG                         GAGTGTATGTTGCCANCCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: GAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|24205242|gb|BU964495.1|BU964495
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|298198461|gb|HO040000.1|HO040000
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|298198235|gb|HO039774.1|HO039774
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|16105248|gb|BI892988.1|BI892988
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAATTTTCTCAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|57575063|gb|CX548038.1|CX548038
EST:     TCGAACCAGCACTG                         GAGTGTATG-TGCCCAACCGAGCATCGGACAAAATCACACAGCTCACTGAT
genomic: TCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTG-CCAACCGAGCATCGGACAAAATCACACAGCTCACTGAT
EST: gi|298191590|gb|HO039069.1|HO039069
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|10237932|gb|BE806820.1|BE806820
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|192310604|gb|FG999249.1|FG999249
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|6455701|gb|AW186384.1|AW186384
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|4405614|gb|AI507763.1|AI507763
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|15814454|gb|BI786729.1|BI786729
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|193326361|gb|FK289358.1|FK289358
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|14516465|gb|BI095137.1|BI095137
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|7639793|gb|AW734108.1|AW734108
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|298195881|gb|HO044272.1|HO044272
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|13478005|gb|BG507655.1|BG507655
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|19347226|gb|BM892106.1|BM892106
EST:     TTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
EST: gi|37995371|gb|CF806960.1|CF806960
EST:     TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTG                         GAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA
genomic: TACTTACAACGGCGGTGTCGTTCTCGGAGCCGACTCTCGAACCAGCACTGgtacactcat ... cctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcttcctgttgctttgggaagtaatgtgtttgtttattttttcctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATAATGTTTACGTGTGTCGCTCTGGATCG
                             tgtttgtttatttttt  CT-rich tract
                        taatgtgtttgtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacactcattctccttcccaaaccaatcccaaattaatttagggttttcgttttttttctttttcttttcttttgaccgtttctttctctgggcaattacacgcttcttttgtttgaggattgagattcgattcttcctgttgctttgggaagtaatgtgtttgtttattttttcctctttcagGAGTGTATGTTGCCAACCGAGCATCGGACAAAATCACACAGCTCACTGATAATGTTTACGTGTGTCGCTCTGGATCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA