1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttgtggtgatttatttatttatttttttaaattttccccttgttctttttgtagcagtttggttaatcaatgaacatgatcaaattgaaccattttcagGGTTTGGTTGAGGCTGACTGGACATGTGCTGTTACTACTTTTAAAGTCTGTTTATGCTGTAGTAGTTATTTTGTCTATATTTTAGTTAATAATGAACTTA
species | Glycine max |
transcript | GLYMA06G06030.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCATTTCTGAACTCATCCCCATGGATCCCTTTGATTTGATACGCGAAG GGTTTGGTTGAGGCTGACTGGACATGTGCTGTTACTACTTTTAAAGTCTGTEST: gi|213591434|gb|DB973839.1|DB973839
genomic: CTTCATTTCTGAACTCATCCCCATGGATCCCTTTGATTTGATACGCGAAGgtatatatat ... ccattttcagGGTTTGGTTGAGGCTGACTGGACATGTGCTGTTACTACTTTTAAAGTCTGT
EST: CTTCATTTCTGAACTCATCCCCATGGATCCCTTTGATTTGATACGCGAAG GGTTTGGTTGAGGCTGACTGGACATGTGCTGTTACTACTTTTAAAGTCTGTEST: gi|151399978|gb|EV269849.1|EV269849
genomic: CTTCATTTCTGAACTCATCCCCATGGATCCCTTTGATTTGATACGCGAAGgtatatatat ... ccattttcagGGTTTGGTTGAGGCTGACTGGACATGTGCTGTTACTACTTTTAAAGTCTGT
EST: CTTCATTTCTGAACTCATCCCCATGGATCCCTTTGATTTGATACGCGAAG GGTTTGGTTGAGGCTGACTGGACATGTGCTGTTACTACTTTTAAAGTCTGT
genomic: CTTCATTTCTGAACTCATCCCCATGGATCCCTTTGATTTGATACGCGAAGgtatatatat ... ccattttcagGGTTTGGTTGAGGCTGACTGGACATGTGCTGTTACTACTTTTAAAGTCTGT
ctttttgtagcagtttggttaatcaatgaacatgatcaaattgaaccattttcagGGTTTGGTTGAGGCTGACTGGACATGTGCTGTTACTACTTTTAAAGTCTGTTTATGCTGTAGTAGTTATTTTGTCTATATTTTAGTTAATAATGAACTTA
ggttaat putative branch site (score: 4)
ccattttc putative PPT
ttaatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtggtgatttatttatttatttttttaaattttccccttgttctttttgtagcagtttggttaatcaatgaacatgatcaaattgaaccattttcagGGTTTGGTTGAGGCTGACTGGACATGTGCTGTTACTACTTTTAAAGTCTGTTTATGCTGTAGTAGTTATTTTGTCTATATTTTAGTTAATAATGAACTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- tgtggtg
- - - - - - - - - - - - - - - - -tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatc