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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatctttctatctcttaaaaacacatataaacaaattaacatgcaaagagaatgatagaataatttgtgatatcttatcatataattaatattaatttatatatagGTGGACCTTGCTGGGGGATACTATGATGCAGGGGACAACGTGAAATATGGGCTCCCCATGGCTTTCACCGTTACTACGCTAGCATGGGGAGCCATTTTTT

Basic information

species Glycine max
transcript GLYMA06G05950.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05950.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0008g02020.t01 (Vitis vinifera), 3'ss of exon 1
gtacatatctttctatctcttaaaaacacatataaacaaattaacatgcaaagagaatgatagaat----aatttgtgatatcttatc-atataattaatattaatttatatatagGTGGACCTTGCTGGGGGATACTATGATGCAGGGGACAACGTGAAATATGGGCTCCCCATGGCTTTCACCGTTACTACGCTAGCATGGGGAGCCATTTTTT
                                | |    |||  |   ||||   | |  |    |      |||     |  ||||  || | | | ||     ||   || |||| ||| |||| ||| ||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| || ||  |||||  ||| || ||||
-------------------------------gtgagattattttctgtcaaaagtactattttttttccgggttttcaccaatttattgatctgaatgattggttttcgcatttagGCGGATCTTGTTGGAGGATATTATGATGCAGGAGACAATGTGAAGTATGGGCTTCCCATGGCTTTCACTGTTACCACTCTTTCATGGTCAGCTATCTTTT

upper sequence: GLYMA06G05950.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0008g02010.t01 (Vitis vinifera), 3'ss of exon 1
gtacatatctttctatctcttaaaaacacatataaacaaat-taacat--------gcaaagagaatgatagaataatttgtg-atatcttatcatataatta---------------atattaatttatatatagGTGGACCTTGCTGGGGGATACTATGATGCAGGGGACAACGTGAAATATGGGCTCCCCATGGCTTTCACCGTTACTACGCTAGCATGGGGAGCCATTTTTT
||||||| | |   |   |  |||||   ||||| |  | | |   ||        |     ||  ||||  | | || | |  |||| |    |||||  ||               ||||  || | ||| |||||||||||||  || |||||||||||||| || ||||| ||||||| |||||| || |||||||||||  |||| ||  || | |||| ||| |||||||
gtacataccatcacaatacaaaaaaaactatatatattagtcttgtatttctttttgtttgaagtttgatgaagttatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtagGTGGACCTTGTGGGTGGATACTATGATGCGGGTGACAATGTGAAATTTGGGCTACCAATGGCTTTCACTATTACGACTTTATCGTGGGCAGCTATTTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatagaataatttgtgatatcttatcatataattaatattaatttatatatagGTGGACCTTGCTGGGGGATACTATGATGCAGGGGACAACGTGAAATATGGGCTCCCCATGGCTTTCACCGTTACTACGCTAGCATGGGGAGCCATTTTTT
                                      tattaat  putative branch site (score: 2)
                tgatatcttatcatat  TA-rich tract