1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttcatttatgatgtcgttgctttcgttgcaacttcagaatgctcttgagtgggtgtatcttgtatgttcctctttaaacttaatttattttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAA
species | Glycine max |
transcript | GLYMA06G05550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTAAGATACTTTGGCAG ACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAGEST: gi|7685547|gb|AW756195.1|AW756195
genomic: GGTTAAGATACTTTGGCAGgttcaccacc ... ttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAG
EST: TTTCTAAGACCTCTGTTGCACCCCTCGAACGGGTTAAGATACTTTGGCAG ACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAGEST: gi|16996901|gb|BM086273.1|BM086273
genomic: TTTCTAAGACCTCTGTTGCACCCCTCGAACGGGTTAAGATACTTTGGCAGgttcaccacc ... ttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAG
EST: TTTCTAAGACCTCTGTTGCACCCCTCGAACGGGTTAAGATACTTTGGCAG ACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAG
genomic: TTTCTAAGACCTCTGTTGCACCCCTCGAACGGGTTAAGATACTTTGGCAGgttcaccacc ... ttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAG
ttgagtgggtgtatcttgtatgttcctctttaaacttaatttattttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAA
acttaat putative branch site (score: 4)
tttatttt CT-rich tract
tctttaaacttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcatttatgatgtcgttgctttcgttgcaacttcagaatgctcttgagtgggtgtatcttgtatgttcctctttaaacttaatttattttatctacagACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAA
cttcatt
- - - - -tgatgtc
- - - - - - - - - tgctttc
- - - - - - - - - - - - - -tgcaact
- - - - - - - - - - - - - - - - - - -gaatgct
- - - - - - - - - - - - - - - - - - - - - - - -gagtggg