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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattgaacactttttttttttttttttgttaaactttgattattcttttaagctcagcataacttagctctactgtttcttcttttctttttttctttagGTTTTGAATTGGATGTAAATAGTTTGTACTTTGTAGCATAATCTGCGGTTTTCTGAATTTGCTGGTAGAAGATTAAAAATTCAGATTAGTGTTAGTTTTG

Basic information

species Glycine max
transcript GLYMA06G04350.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710162|gb|BW681074.1|BW681074
EST:     CAAATCAGGAATACCTAAGTAACATCAAATAAATACCAAACCTTCCTAAG                         GTTTTGAATTGGATGTAAATAGTTTGTACTTTGTAGCATAATCTGCGGTTT
genomic: CAAATCAGGAATACCTAAGTAACATCAAATAAATACCAAACCTTCCTAAGgtaaatctct ... ttttctttagGTTTTGAATTGGATGTAAATAGTTTGTACTTTGTAGCATAATCTGCGGTTT
EST: gi|213604331|gb|DB970591.1|DB970591
EST:     CAAATCAGGAATACCTAAGTAACATCAAATAAATACCAAACCTTCCTAAG                         GTTTTGAATTGGATGTAAATAGTTTGTACTTTGTAGCATAATCTGCGGTTT
genomic: CAAATCAGGAATACCTAAGTAACATCAAATAAATACCAAACCTTCCTAAGgtaaatctct ... ttttctttagGTTTTGAATTGGATGTAAATAGTTTGTACTTTGTAGCATAATCTGCGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaagctcagcataacttagctctactgtttcttcttttctttttttctttagGTTTTGAATTGGATGTAAATAGTTTGTACTTTGTAGCATAATCTGCGGTTTTCTGAATTTGCTGGTAGAAGATTAAAAATTCAGATTAGTGTTAGTTTTG
           gcataac  putative branch site (score: 3)
                 cttagctctactgttt  CT-rich tract
                                     ttttctttttttcttt  TA-rich tract