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gtgtgtccctcttccttcaaaaaattatgcctaactgttgtgacaccacaatctgctggtttgattgattgattgtggattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACTTCGAGTACTCCGAGGATGAAAGGAGGACCAGGATTGGATCCCTAAAAAA
species | Glycine max |
transcript | GLYMA06G01260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACTEST: gi|18039820|gb|BM308114.1|BM308114
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACTEST: gi|23727059|gb|BU761546.1|BU761546
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACTEST: gi|209697050|gb|BW667040.1|BW667040
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACTEST: gi|209723879|gb|BW675225.1|BW675225
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACTEST: gi|213587825|gb|DB959649.1|DB959649
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACTEST: gi|213607792|gb|DB959117.1|DB959117
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
EST: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTT GCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
genomic: GATCATCGCAACCACAATGTCCGGTCCCCTCGATCGTTTTGCCAGACCTTgtgtgtccct ... gattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACT
aactgttgtgacaccacaatctgctggtttgattgattgattgtggattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACTTCGAGTACTCCGAGGATGAAAGGAGGACCAGGATTGGATCCCTAAAAAA
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtccctcttccttcaaaaaattatgcctaactgttgtgacaccacaatctgctggtttgattgattgattgtggattttgcagGCTTTGAGGGGTTTTCGGGCAGTGATGAGAAGAAGGAGAGGAGATCTGACTTCGAGTACTCCGAGGATGAAAGGAGGACCAGGATTGGATCCCTAAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA