Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT

Basic information

species Glycine max
transcript GLYMA06G00980.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
              | |||      |||   |   |     |||  |||       | |||  ||| |  |  |||  |        ||      |  ||| ||||| || ||||| ||||| || ||||| |||||||||||||| |||||||| || ||| | || || |||||||||||||| || || || || ||
--------------gtaagctcccaatcttccccttcactttctcggggccag--atctgatctgagatgaggttgacacacgacgcat------gcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 3'ss of exon 1
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgat---agGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
             |   | |  | |    |   | ||   | ||| || || | |  |||| | |    |  |   |      ||| |||   |   |   ||| ||||| || || || || || |||||||| ||||| |||||||| |||||||| || ||| | || ||||| ||||||||||| || || || || ||
--ccgattggagatcggatttgtggggaaaaaaagttgggagctttggattctgttcttga-tggggggatttgcttatttgctttcattcgatctgttgcagGCATGGGTGCGGCGTACGGGACGGCGAAGAGCGGCGTCGGCGTGGCGTCCATGGGCGTGATGCGCCCGGAGCTCGTGATGAAGTCCATCGTGCCCGTGGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
-----aatttcacacgtgtgaaagtgattgat-cgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
     |||||     |  |  | |||  ||   ||   ||     ||  ||  ||| ||  |  |||  ||||     | ||||      | | | | | |   ||| ||||| || || || || ||||| ||||||||||| |||||||| ||||||||||| ||| | || ||||| || |||||||| || || || || ||
gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggt--gaatgacatgatctccctctgtgta----tgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
------------aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
              | ||   | | |  |  |  |  ||  | || |  |  || |   | |  |   ||   |||||      |||        || || ||| |||  ||||||||||||||| ||||| || |||||||||||||| || ||||| || ||||| || ||||| || ||||||||||||||||||||||| || |||||
attcgataatttcttctccttcttcttcattttctcaat-aaccggacatagatatatagatcttcgattctgattgactgttgttt--------ttataattt-ttg--agGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 1
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaa-atttgtgaggaattttattttgttgat--agGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
     |||   ||||  | || | |     |   |   |   |   |  |  |||  |  | |||  |||     |     || |   || ||||||    ||| ||||| ||||||||||| || || || ||||| || || ||||| || |||||||| ||| |||||||||| ||||||||||| || || || || ||
---gccaccactgtgtcactgttgggaaagtgagacgatgtgcagtgaatcattttgtacagttgtgaaaccgcgttccttgactacgatgttgttggcgcagGCATGGGCGCTGCCTATGGAACGGCCAAAAGTGGAGTTGGAGTGGCATCTATGGGTGTCATGCGACCTGAGCTAGTGATGAAGTCCATCGTCCCAGTGGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
----aatttcac-acgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtt-tgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
    | |  |     | |   |  |  ||| |     | | ||| |||    | ||| | | | |  |  ||||         |||||  |||   |||     ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||| | || |||||||||||||||||||| || || || ||
aagcagtgacgttgagggcctatcttgttgttttgaaggactttgatc---agcttgctcgctctttaccgatatgttaacccgaggaggttt---ttgagcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattt-tgttgat--agGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
    |  |      ||   | |  |  |  |  ||||||  | || ||   ||   |||||| |      | | ||  |      |  ||  | |||||  ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||| | || ||| |||||||||| || || || || || ||
---gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaatttta---ttttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
    | |||    ||   |  |     |  |||| |        |||| |      |   ||||  || | ||   | |     |  |   |||||     ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||| | || |||||||||||||||||||| || || || ||
---ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatct-------tagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttga--tagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
         |  ||||| |   |||  |  |  |  || ||| |       ||||||      |   || |  |  | ||     |    ||  || || |||    ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||| | || |||||||||||||||||||| || ||||| ||
---------cccgtgaacggtgttgggcacttaagcttcaatttcctcagctagggtgcgacttcgaaactcctggacatgaactaaatgttgaatgttattgcgtcagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
                                 |     | ||||    ||   | |||||  | ||   |||  | || | ||      | | | | ||| |||||||||||||||||||| || ||||| |||||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| || || || ||
------------------------------gtaagccagattctt----tttcctctttgatctaatcgcaat--gcgatggatcaa---tcgattacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
------------------------------------------------------------------------------------aatttca--cacgtgtgaaagtgattgatcgatcgaatttt---aatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
                                                                                    |  ||    || |  |     |   ||  ||||    ||     ||||    | ||         || |     |  ||  |  |||||||| |||       ||| ||||||||||||||||| || || |||||||| || || ||||| |||||||| || ||| | || ||||| |||||||| ||||| || || || ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttcttt-----gcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

upper sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
----------------------------------------------------------------------aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaatt--gata----------aaaatttgtgaggaatttt----attttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
                                                                       ||| || | |  |||   ||    || |||      ||  |    |  ||  |||    |||   ||||          ||||||    |     |      ||||| ||   ||| ||||||||||||||||| || || |||||||| || || ||||| |||||||| || ||| | || ||||| |||||||| ||||| || || || ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgca-atgcctgagcttgggccatggattcg-ccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189461|gb|HO037864.1|HO037864
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|209711726|gb|BW676865.1|BW676865
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|7925897|gb|AW831923.1|AW831923
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|15285065|gb|BI468956.1|BI468956
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|21887906|gb|BQ741119.1|BQ741119
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|22523912|gb|BU082723.1|BU082723
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|298165361|gb|HO011410.1|HO011410
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|192297106|gb|FG988202.1|FG988202
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|298197619|gb|HO045098.1|HO045098
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|298182985|gb|HO028248.1|HO028248
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|213616561|gb|DB967197.1|DB967197
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|21678191|gb|BQ630542.1|BQ630542
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|37996309|gb|CF807898.1|CF807898
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|5057934|gb|AI736410.1|AI736410
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|6951617|gb|AW423685.1|AW423685
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|298194380|gb|HO041028.1|HO041028
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|192327896|gb|FK022119.1|FK022119
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|27424406|gb|CA935926.1|CA935926
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|120533189|gb|EH261322.1|EH261322
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|16280825|gb|BI944165.1|BI944165
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|213620177|gb|DB965441.1|DB965441
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|23725814|gb|BU760874.1|BU760874
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|298184539|gb|HO029752.1|HO029752
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAACAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|19346202|gb|BM891082.1|BM891082
EST:     CTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: CTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|19935080|gb|BQ080110.1|BQ080110
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|151403531|gb|EV273341.1|EV273341
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|213590541|gb|DB968105.1|DB968105
EST:     GGCGCCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|209722365|gb|BW680131.1|BW680131
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|192324769|gb|FK016870.1|FK016870
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGTTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|120533296|gb|EH261429.1|EH261429
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|9258617|gb|BE346764.1|BE346764
EST:     ACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: ACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|7691796|gb|AW759917.1|AW759917
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
EST: gi|8826325|gb|BE210055.1|BE210055
EST:     GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA
genomic: GGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTgtaatcaatc ... ttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
               aattgat  putative branch site (score: 4)
                                      ttttatttt  putative PPT
                    ataaaaatttgtgagg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT

- -ttcacac
- - - - - - - - - gtgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa