Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattctctctctcctatgtcccaatcacacttcgctcttcgttaatttctaacatttctctgcgttctgaagCTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACTACTTAATACGACACGAGTTTGATAGGAAAACGAAAACCTGCGTTGCCAA

Basic information

species Glycine max
transcript GLYMA05G37850.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707541|gb|BW665000.1|BW665000
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAG                         CTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctc ... cgttctgaagCTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
EST: gi|7924868|gb|AW830894.1|AW830894
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAG                         CTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctc ... cgttctgaagCTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
EST: gi|20449385|gb|BQ253509.1|BQ253509
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCT-A-                         --AGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctc ... cgttctgaagCTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
EST: gi|213590516|gb|DB968094.1|DB968094
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAG                         CTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctc ... cgttctgaagCTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
EST: gi|192303373|gb|FG997431.1|FG997431
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAG                         CTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctc ... cgttctgaagCTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
EST: gi|209718854|gb|BW669041.1|BW669041
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAG                         CTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctc ... cgttctgaagCTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
EST: gi|213613811|gb|DB961308.1|DB961308
EST:     TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAG                         CTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT
genomic: TCTCTTTTCTCCTCCCTCCCTCACGCAACCGCCAATTCCTGAACCCTAAGgtgaattctc ... cgttctgaagCTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcccaatcacacttcgctcttcgttaatttctaacatttctctgcgttctgaagCTAGCGCCATGGCTGTCGTTTCGCGAAGTGCGACGACCTATACGCGCCACTACTTAATACGACACGAGTTTGATAGGAAAACGAAAACCTGCGTTGCCAA
                             ttctaac  putative branch site (score: 1)
                                     tttctctgcgttct  CT-rich tract
                        ttaatttctaacattt  TA-rich tract