Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccctccttttccttagaattttaggttgtctttcacttatatacataatttttaccattttacttgtggatgtgggatctgaaacaaatttttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC

Basic information

species Glycine max
transcript GLYMA05G37730.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os02g44630.3 (Oryza sativa), 3'ss of exon 1
gtacccctccttttccttagaattttaggttgtctttcacttatatacataatttttaccattttacttgtggatgtgggatctgaaacaaatttttttgttgaaaggttt--tgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC
                                             || | | | || ||        |  ||      |      |||||| |       || |  |   |  | |  |     | ||      ||  ||   |||| ||||||||||||||||| || || ||||| || || ||||| |||||||||||||| ||  ||||  | ||||||||  | ||||| || || || ||
---------------------------------------------tatacagtctt-acttcaactgtcatgacaactgaccacaaaacaactacggcaattaagggcactactaatatccattatattgtctgttactgcaacagGAGGACACATCAACCCAGCAGTTACTTTTGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACCCGGGCCATCTTCTACATAGTGATGCAATGCCTAGGGGC

upper sequence: GLYMA05G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
gtacccctccttttccttagaattttaggttgtctttcacttatatacataatttttaccattttacttgtggatgtgggatctgaaacaaatttttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC
                                            |  |||  | || | ||    |       ||       ||  ||  ||       |     |       || |       | |||    ||      |||| |||||||||||||||||||||||||| || || || ||||| |||||||||||||| || |||||  | ||||||||||||||||| || || || ||
------------------------------------------gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaaccaagg-gccaccacaccactaa-tggttgttacctgctgctgcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC

upper sequence: GLYMA05G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: AC209208.3_FGT002 (Zea mays), 3'ss of exon 1
gtacccctccttttccttagaattttaggttgtctttcacttatatacataatttttaccattttacttgtggatgtgggatctgaaaca-aatttttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC
                                      |  | |  | | |||   | | |||   |  |   |     || |   |||| || |         ||||       |||||      |       |  ||   |||| ||||||||||||||||||||||| || || || || || || |||||||||||||| || ||||| || |||||||| |||||||| || || || ||
-------------------------------------gaactgtgaa-agaatccatgcaattcagcaagcata-----gaccaagaacacaactacaacaaccaaagacacc--actaatggttgttacctgctactgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCTGTCCCTGACTAGGGCCCTCTTCTACATCATCATGCAATGCCTGGGTGC

upper sequence: GLYMA05G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G174807_T01 (Zea mays), 3'ss of exon 1
--------------------------gtacccct--ccttttccttagaattttaggttgtct-ttcacttatatacataatttttaccattttacttgtggatgtgg---gatctgaaacaaatttttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC
                          |   |  |  | |  ||||  |  | ||   |  |||  |  | |     | |  ||| | | |  |   |||  |||||       |||    |    | | |   |       | |        |    ||| |  | |    | |||| || ||||||||||| || |||||||| || || ||  |||| |||||| |||||||||| |||||| |||| ||||| ||||||||||| || || ||
gtaccgtacacgccgcccgcccggccgcctctttggcttcgtcctctgtttctttcttcctctgcttgccttgcctcgtcgtttgtgcaaactggtttgctgatgtttctctctctctctctctctctctctctctctctctctctctctctctctctctcttctcgcaactgcagGCGGGCACATCAACCCGGCGGTGACCTTCGGGCTGTTCCTGGCGAGGAAGTTGTCCCTCACCAGGGCGGTGTTTTACATCATCATGCAGTGCCTGGGCGC

upper sequence: GLYMA05G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G174807_T03 (Zea mays), 3'ss of exon 1
gtacccctccttttccttagaattttaggttgtctttcacttatatacataatttttaccattttacttgtggatgtgggatctgaaacaaatttttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACA--AGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC
                    || |  |||  | |               | |  ||     | || || | |     |   ||    || |      | |||  |     |    |   ||| |  |    | ||  |     | |||   | ||||    | |   | |   ||       | ||||| |  |  | | |  ||     |||||    |||||                      
-----------------cgcaactgcaggcgggcacatcaacccggcggtgaccttcgggctgttcctggcgaggaagttgtccctcaccagggcggt-gttttacatcatcatgcagTGCCTGGGCGCCATCTGCGGC----GCGGGCGTCGTCAAG--GGGTTCCAGCAGGGGCTGTACATGGGCAACGGCGGCGGCGCCAACGTCGTGGCGCCCGGCTACA----------------------

upper sequence: GLYMA05G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv02s0025g03390.t01 (Vitis vinifera), 3'ss of exon 1
-------------------gtacccctccttttccttagaattttaggttg--tctttcacttatatacataatttttaccattttacttgtggatgtgggatctgaaacaaattt--ttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC
                    | || |  | |||| ||||  ||||  |||      || |||    | |   |  ||   | | || ||| | |   |  ||| ||        ||  | |  ||   ||  | |||   |||     | || ||||||||| ||||| ||||||||||||||||||||||||||||||||  |  |||| ||||||||||| || || |||||  | |||||||| || |||||||| ||||| ||
gtgtgcaccactgctcttccttcctcagcctttctttagctttttctgttaaacactttactgggttgctctaagttcttcttcttcctt-tagccttctgatgtgggttgctcttagtgtgttttttagcatctgatggaagttttgtgtg-gtttgttgtctcagGAGGACACATCAACCCAGCTGTGACCTTTGGTCTGCTACTGGCGAGGAAGCTGTCTCTTACCAGGGCAATTTTCTACATCATAATGCAGTGCCTTGGTGC

upper sequence: GLYMA05G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv15s0046g02410.t01 (Vitis vinifera), 3'ss of exon 1
gtacccctccttttccttagaattttaggttgtctttcacttatatacataatttttaccattttacttgtggatgtgggatctgaaacaaatttttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC
                                   |     ||  | | ||  | || ||   |  | |    |    |  |   | | ||| |||  | |      || |||| || |  ||  | |   |  |||    |||| || ||||| |||||||| ||||| ||||| ||  | |||||||| ||||||||||| ||  | ||  |||||||||| ||||||||||| || || ||
-----------------------------------tctgtctactttcttacctctttccccatagcctcc--acacagttttctagagaaagtttcctct------gtgttgatctta-tcatttgttgatgggtttgggcagGAGGGCACATAAACCCAGCGGTGACATTTGGGCTGCTCTTGGCAAGAAAGCTGTCCCTAACCCGAGCCGTGTTCTACATGATCATGCAGTGCCTGGGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410226|gb|EV280041.1|EV280041
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|192311795|gb|FK003166.1|FK003166
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|213611783|gb|DB958877.1|DB958877
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCCAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|7284289|gb|AW596883.1|AW596883
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|16105938|gb|BI893678.1|BI893678
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|209706285|gb|BW680672.1|BW680672
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCCAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|151397692|gb|EV267565.1|EV267565
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|8826812|gb|BE210542.1|BE210542
EST:     TGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: TGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|209723242|gb|BW675189.1|BW675189
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCCAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|9264523|gb|BE352670.1|BE352670
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|16347132|gb|BI972727.1|BI972727
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|10845852|gb|BF068888.1|BF068888
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|9565202|gb|BE474711.1|BE474711
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|193651600|gb|FK596885.1|FK596885
EST:     ATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: ATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|208260614|gb|GE059398.1|GE059398
EST:     CTACTGCACTGCTGGAATTTCGAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAG
genomic: CTACTGCACTGCTGGAATTTC-AGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAG
EST: gi|208242821|gb|GE038851.1|GE038851
EST:     CTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|192330652|gb|FK022293.1|FK022293
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|298197011|gb|HO041778.1|HO041778
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|7640074|gb|AW734383.1|AW734383
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCCAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|7684882|gb|AW755530.1|AW755530
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|192311794|gb|FK003165.1|FK003165
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|192312711|gb|FK003951.1|FK003951
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|213590286|gb|DB963849.1|DB963849
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCCAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|209718915|gb|BW669104.1|BW669104
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCCAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|41145765|gb|CK605976.1|CK605976
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|151394316|gb|EV264187.1|EV264187
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|17022962|gb|BM093996.1|BM093996
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|14126351|gb|BG790789.1|BG790789
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
EST: gi|192312257|gb|FK003950.1|FK003950
EST:     CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAG                         GGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC
genomic: CTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGgtacccctcc ... gttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC
                                              ttgtttc  CT-rich tract
     tttttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacccctccttttccttagaattttaggttgtctttcacttatatacataatttttaccattttacttgtggatgtgggatctgaaacaaatttttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG