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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactctctctctctcacacacacactttttcaattttcggcttcctaatttcacactgacatcgtcttcgaaacacgactttgcgcagATTGTTGCCTCGCGTTGTGGTG

Basic information

species Glycine max
transcript GLYMA05G37590.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720018|gb|BW651100.1|BW651100
EST:     GAATTTATGGCACACCGATCTCTTGAGATCCATTCAGGCCGATACACCTT                         ATTGTTGCCTCGCGTTGTGGTG
genomic: GAATTTATGGCACACCGATCTCTTGAGATCCATTCAGGCCGATACACCTTgtaaggactc ... ctttgcgcagATTGTTGCCTCGCGTTGTGGTG
EST: gi|7042332|gb|AW472226.1|AW472226
EST:     GAATTTATGGCACACCGATCTCTTGAGATCCATTCAGGCCGATACACCTT                         ATTGTTGCCTCGCGTTGTGGTG
genomic: GAATTTATGGCACACCGATCTCTTGAGATCCATTCAGGCCGATACACCTTgtaaggactc ... ctttgcgcagATTGTTGCCTCGCGTTGTGGTG
EST: gi|213620495|gb|DB957339.1|DB957339
EST:     GAATTTATGGCACACCGATCTCTTGAGATCCATTCAGGCCGATACACCTT                         ATTGTTGCCTCGCGTTGTGGTG
genomic: GAATTTATGGCACACCGATCTCTTGAGATCCATTCAGGCCGATACACCTTgtaaggactc ... ctttgcgcagATTGTTGCCTCGCGTTGTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcggcttcctaatttcacactgacatcgtcttcgaaacacgactttgcgcagATTGTTGCCTCGCGTTGTGGTG
                    cactgac  putative branch site (score: 2)
            taatttca  TA-rich tract