1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatcaggacttaaactagaatgtaaacataatattaaatcaatgttgacagtgattctaaagggaattgtggattgaagctttcacccttgcacttgcagCAGCTCCAAGATGCAGAACAATCAAGGTCATGGCTTCACCAACTGTTGCAGCACCAAAGAGAGAAAAGGATCCAAAAAAGCGAGTAGTAATAACAGGAAT
species | Glycine max |
transcript | GLYMA05G36690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGACTACAAATGCATTCGCCAAGTCACTACATTTCAGCTTCTTCAT CAGCTCCAAGATGCAGAACAATCAAGGTCATGGCTTCACCAACTGTTGCAGEST: gi|192302956|gb|FG996972.1|FG996972
genomic: GCAGAGACTACAAATGCATTCGCCAAGTCACTACATTTCAGCTTCTTCATgtaagagcca ... gcacttgcagCAGCTCCAAGATGCAGAACAATCAAGGTCATGGCTTCACCAACTGTTGCAG
EST: GCAGAGACTACAAATGCATTCGCCAAGTCACTACATTTCAGCTTCTTCAT CAGCTCCAAGATGCAGAACAATCAAGGTCATGGCTTCACCAACTGTTGCAG
genomic: GCAGAGACTACAAATGCATTCGCCAAGTCACTACATTTCAGCTTCTTCATgtaagagcca ... gcacttgcagCAGCTCCAAGATGCAGAACAATCAAGGTCATGGCTTCACCAACTGTTGCAG
tgacagtgattctaaagggaattgtggattgaagctttcacccttgcacttgcagCAGCTCCAAGATGCAGAACAATCAAGGTCATGGCTTCACCAACTGTTGCAGCACCAAAGAGAGAAAAGGATCCAAAAAAGCGAGTAGTAATAACAGGAAT
ttctaaa putative branch site (score: 2)
cccttgc putative PPT
attctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcaggacttaaactagaatgtaaacataatattaaatcaatgttgacagtgattctaaagggaattgtggattgaagctttcacccttgcacttgcagCAGCTCCAAGATGCAGAACAATCAAGGTCATGGCTTCACCAACTGTTGCAGCACCAAAGAGAGAAAAGGATCCAAAAAAGCGAGTAGTAATAACAGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - -gaatgta
- - - - - - - - - - - - - - - - - - - - - tgttgac