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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcactattatgtgcaaatgcagaaattaattccattttgatgagtttcagtgttgtaaaactgcaattatgtaactaacattgagatatttttccatagGATGTTTATTTGCAATTTCCATTGCTAAGGAGGAAGCCACAAAATTGGGGACGGTCATCGGGATTGATCTTGGAACGACCTATTCATGTGTTGGTGTTTA

Basic information

species Glycine max
transcript GLYMA05G36620.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36620.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 1
----agcactattatgtgcaaatgcagaaattaattccattttgatgagtttcagtgttgtaaaactgcaattatgtaactaacattgagatatttttccatagGATGTTTATTTGCAATTTCCATTGCTAAGGAGGAAGCCACAAAATTGGGGACGGTCATCGGGATTGATCTTGGAACGACCTATTCATGTGTTGGTGTTTA
    || |||   | |    |   |   || | |      ||   | |||    |   ||| |  ||  | ||  ||   ||| |||   | | | |     ||||| | ||  ||||||||||||||| || |||||||| || || ||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||
agaaagaactgacaagctggatcacctgaactgaaaatggttc--taagtgctggctgtgtgag-ctttatttgagtc-ttaatatttccaaactgtattgcagGATTTCTAGCTGCAATTTCCATTGCAAAAGAGGAAGCAACCAAGTTGGGAACTGTCATCGGGATAGATCTTGGAACAACCTACTCATGTGTTGGTGTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986537|gb|BE660645.1|BE660645
EST:     TGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTGGCTATCATTTCCTTCG                         GATGTTTATTTGCAATTTCCATTGCTAAGGAGGAAGCCACAAAATTGGGGA
genomic: TGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTGGCTATCATTTCCTTCGgtaactttca ... ttttccatagGATGTTTATTTGCAATTTCCATTGCTAAGGAGGAAGCCACAAAATTGGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcagtgttgtaaaactgcaattatgtaactaacattgagatatttttccatagGATGTTTATTTGCAATTTCCATTGCTAAGGAGGAAGCCACAAAATTGGGGACGGTCATCGGGATTGATCTTGGAACGACCTATTCATGTGTTGGTGTTTA
                            aactaac  putative branch site (score: 1)
                                          tatttttcc  putative PPT
                    aattatgtaactaa  TA-rich tract