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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttactctctctctctctctcaatcctattcattttcgttcttgattaatcgtggttttgttgttttgaattgttgtataacccgttgatggatttgtgccttgtttgctgatactcgtaattgaggttttactgaaattttgtttgttgtcattgctagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAGAAGCTTGGTGTGGGTGGTGTGATTACTCTCAACGAGCCCTATGAAACCT

Basic information

species Glycine max
transcript GLYMA05G36020.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193616053|gb|FK566901.1|FK566901
EST:     TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAG                         TTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
genomic: TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGgttttactct ... tcattgctagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
EST: gi|120533128|gb|EH261261.1|EH261261
EST:     TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAG                         TTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
genomic: TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGgttttactct ... tcattgctagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
EST: gi|15001047|gb|BI321861.1|BI321861
EST:     TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAG                         TTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
genomic: TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGgttttactct ... tcattgctagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
EST: gi|192294262|gb|FG986351.1|FG986351
EST:     TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAG                         TTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
genomic: TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGgttttactct ... tcattgctagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
EST: gi|120533275|gb|EH261408.1|EH261408
EST:     TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAG                         TTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
genomic: TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGgttttactct ... tcattgctagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgatactcgtaattgaggttttactgaaattttgtttgttgtcattgctagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAGAAGCTTGGTGTGGGTGGTGTGATTACTCTCAACGAGCCCTATGAAACCT
 tgctgat  putative branch site (score: 3)
                      ttttactgaaatttt  TA-rich tract