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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagctctattctttacgcttcaaatttgaaaatggataactctaaccgaattgggtacttggttggttcgtagATGTTGAAGGCTCACCAACAAGCACAAGTTGATATCATTGACAGGTTGCCCACGCCTTTTGGGTTGGTTCGCTCCGGTGTTGCACCCGATCACCCTGAAA

Basic information

species Glycine max
transcript GLYMA05G35620.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35620.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S302_37V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------gtaaagctctat-tctttacgcttcaaatttgaaaatggataactctaaccgaattgggtacttggttggttcgtagATGTTGAAGGCTCACCAACAAGCACAAGTTGATATCATTGACAGGTTGCCCACGCCTTTTGGGTTGGTTCGCTCCGGTGTTGCACCCGATCACCCTGAAA
                                            ||       ||| ||  |   |||| |  || | | |||||  |  | |     ||| | |      ||||  | || || ||||   |    ||  |||  | || || ||  | || ||||||||||| || ||||||||||||||||| || || || |||||||| || || |
gtatgtgaattgtgcctttgttcccctttactgactaatacggtgttggaagatatctccctgttcttcta--ttaatattggattgcattgatt---ttgagaatgatactggt--gcagGTGCTGAAACGTTTTGAAAGAGCGAAGGTGGACATTTTGGATAGGTTGCCCACTCCCTTTGGGTTGGTTCGCTCTGGAGTGGCTCCCGATCATCCAGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaatttgaaaatggataactctaaccgaattgggtacttggttggttcgtagATGTTGAAGGCTCACCAACAAGCACAAGTTGATATCATTGACAGGTTGCCCACGCCTTTTGGGTTGGTTCGCTCCGGTGTTGCACCCGATCACCCTGAAA
                     ctctaac  putative branch site (score: 2)
     atttgaaaat  TA-rich tract