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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcactcactatttaaatttaattagtagctgaagctgaagagatatctatgagatggtcatctatctgaccttcttttatatttttcagGTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAATCCTTATTTGGAAAAG

Basic information

species Glycine max
transcript GLYMA05G35220.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35220.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g03980.t01 (Vitis vinifera), 3'ss of exon 1
gtatgtcactcactatttaaatttaattagtagctgaagctgaagagatatctatgagatggtcat-ctatctgaccttcttttata--------tttttcagGTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAATCCTTATTTGGAAAAG
   |         ||   | | ||| ||    ||    | |  || |   |||   |  | || || ||   | ||  |  | ||||         ||||||||| || ||||||||||| ||| | ||||||||||||||||| ||||| || | || |||||||||||||||  | ||||||||||
---ttaagtaggatacccatagttacttgtatgcatttgttatagcgtgttctgccactttgttattctgcttaacactgctctataatgggctccttttcagGTAGGTTTTGAGATGGTAGATGCTATAGCTGAAGCTGAAGGAATATCCATTAGCAGTGTTTCCTTCAAATCGCTGTTTGGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307381|gb|FK001969.1|FK001969
EST:     TTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAAT                         GTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATG
genomic: TTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATgtatgtcact ... tatttttcagGTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATG
EST: gi|213595724|gb|DB972152.1|DB972152
EST:     TTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAAT                         GTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATG
genomic: TTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATgtatgtcact ... tatttttcagGTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATG
EST: gi|298185189|gb|HO030402.1|HO030402
EST:     TTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAAT                         GTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATG
genomic: TTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATgtatgtcact ... tatttttcagGTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATG
EST: gi|151403649|gb|EV273459.1|EV273459
EST:     TTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAAT                         GTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATG
genomic: TTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATgtatgtcact ... tatttttcagGTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaagagatatctatgagatggtcatctatctgaccttcttttatatttttcagGTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAATCCTTATTTGGAAAAG
                             atctgac  putative branch site (score: 3)
                                   ccttcttttatatttt  CT-rich tract
                                     ttcttttatatttttc  TA-rich tract