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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttattcttcttcttctccgacgacattgacgcttgatttctccgttattttttctgtttctaatggtcggaattaattgcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGGGGCGTGGATCTCGATGCGC

Basic information

species Glycine max
transcript GLYMA05G35030.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35030.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0020g04790.t01 (Vitis vinifera), 3'ss of exon 1
gtgagttattcttcttcttctccgacgacattgacgcttgatttctccgttattttttctgtttctaatggtcggaattaattgcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGGGGCGTGGATCTCGATGCGC------------
              |   ||     | ||| || |   || |   |  |    ||| ||||||||| | | ||    |        | |  |||| || || || || ||||||||  | | ||             |||||||||||||||||||||||||||||| |||||||| || ||| | ||||| |            
-------------gtgagtccaaagccacagtg-catctgctgattaagcc--tttctctgtttctgacgttctttctctgccttctgtttagGCGGATGTCGAAGTTGATGTGGCCCCAGGAGT------------GCCGAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGGGGTGTCGATTTGGATGCACTTCTCGACATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072815|gb|AW102202.1|AW102202
EST:     GGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|10231342|gb|BE800230.1|BE800230
EST:     GAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|15000210|gb|BI321024.1|BI321024
EST:     GTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298196145|gb|HO044536.1|HO044536
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|192303717|gb|FG998671.1|FG998671
EST:     ATAGACCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|209717760|gb|BW671554.1|BW671554
EST:     GAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|10710640|gb|BF010358.1|BF010358
EST:     GCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|24136561|gb|BU927071.1|BU927071
EST:     AGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: AGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|12688318|gb|BG154654.1|BG154654
EST:     GTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGTGCGGCTGCAGCAGCAGCAGGGCAGCCGAA
genomic: GTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTG-GCGGCTGCAGCAGCAGCAGGGCAGCCGAA
EST: gi|22540520|gb|BU090363.1|BU090363
EST:     GCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|193728006|gb|FK666708.1|FK666708
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|8402470|gb|BE058104.1|BE058104
EST:     GTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|209717759|gb|BW671553.1|BW671553
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|192328678|gb|FK022506.1|FK022506
EST:     ATAGATCTGCTTCTTGCTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298173456|gb|HO016792.1|HO016792
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTATCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298193483|gb|HO033917.1|HO033917
EST:     TAGATCTGGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: TAGATCT-GCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|120531731|gb|EH259864.1|EH259864
EST:     CCCTAGCAAGCGGGACAATG                         GCAGACCTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: CCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|7232266|gb|AW567623.1|AW567623
EST:     CTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: CTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|6095036|gb|AW119703.1|AW119703
EST:     AGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: AGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|33389978|gb|CA853185.1|CA853185
EST:     AGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: AGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|8827263|gb|BE210993.1|BE210993
EST:     CTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: CTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|26058409|gb|CA801323.1|CA801323
EST:     GTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298182023|gb|HO026198.1|HO026198
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|151394786|gb|EV264657.1|EV264657
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|15813676|gb|BI785951.1|BI785951
EST:     TGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: TGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|17400806|gb|BM177588.1|BM177588
EST:     TGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: TGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298173417|gb|HO016753.1|HO016753
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCGAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|31465705|gb|CD407733.1|CD407733
EST:     GTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|193731020|gb|FK666988.1|FK666988
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAANG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCA
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCA
EST: gi|298176894|gb|HO026901.1|HO026901
EST:     ATAGATTTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|18039654|gb|BM307948.1|BM307948
EST:     GAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|151412573|gb|EV282385.1|EV282385
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|15200846|gb|BI424562.1|BI424562
EST:     AAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: AAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|213611640|gb|DB969028.1|DB969028
EST:     AGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: AGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|192310411|gb|FG999154.1|FG999154
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|209718832|gb|BW669019.1|BW669019
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|9203875|gb|BE330099.1|BE330099
EST:     GCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|193332467|gb|FK301613.1|FK301613
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|4396680|gb|AI495677.1|AI495677
EST:     TTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: TTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|15814399|gb|BI786674.1|BI786674
EST:     AAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: AAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|42722919|gb|CK768818.1|CK768818
EST:     GTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|17518521|gb|BM187555.1|BM187555
EST:     TTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: TTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|213605345|gb|DB964568.1|DB964568
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|4395732|gb|AI494729.1|AI494729
EST:     GAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|208036566|gb|GD832619.1|GD832619
EST:     CCCTAAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: CCCT-AGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|17401647|gb|BM178429.1|BM178429
EST:     GTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|254342656|gb|GR858818.1|GR858818
EST:     TAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: TAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|192327314|gb|FK019561.1|FK019561
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|20448751|gb|BQ252875.1|BQ252875
EST:     AGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: AGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298190472|gb|HO032593.1|HO032593
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|14011645|gb|BG726567.1|BG726567
EST:     GCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGATGAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|151398697|gb|EV268568.1|EV268568
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|213589733|gb|DB965865.1|DB965865
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|209710051|gb|BW681043.1|BW681043
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|9203710|gb|BE329934.1|BE329934
EST:     GGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: GGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|7684821|gb|AW755469.1|AW755469
EST:     CTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: CTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298173375|gb|HO016711.1|HO016711
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|209708887|gb|BW673895.1|BW673895
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|31464070|gb|CD406098.1|CD406098
EST:     AAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: AAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298189454|gb|HO037857.1|HO037857
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAGGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|192310412|gb|FG999155.1|FG999155
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298172870|gb|HO019854.1|HO019854
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|298184767|gb|HO029980.1|HO029980
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|192303593|gb|FG994515.1|FG994515
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
EST: gi|192325342|gb|FK017143.1|FK017143
EST:     ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATG                         GCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG
genomic: ATAGATCTGCTTCTTGTTGTTGGAAAGAAACCCTAGCAAGCGGAACAATGgtgagttatt ... gcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttctccgttattttttctgtttctaatggtcggaattaattgcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGGGGCGTGGATCTCGATGCGC
           ttattttttctgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttattcttcttcttctccgacgacattgacgcttgatttctccgttattttttctgtttctaatggtcggaattaattgcatttgcagGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGGGGCGTGGATCTCGATGCGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT