1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...atcaaattttctgatgcaagatctgtttcacattggtggttgcttcttcttcattacatgtactattaattgtaatacttcgttcgctggatcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG
species | Glycine max |
transcript | GLYMA05G34790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|151396774|gb|EV266647.1|EV266647
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|209696727|gb|BW672906.1|BW672906
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|193671948|gb|FK616274.1|FK616274
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|213611739|gb|DB958861.1|DB958861
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTAGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|213617812|gb|DB967258.1|DB967258
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|193681003|gb|FK622851.1|FK622851
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|213605046|gb|DB956379.1|DB956379
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|15285957|gb|BI469848.1|BI469848
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|6070595|gb|AW099982.1|AW099982
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACAEST: gi|7684820|gb|AW755468.1|AW755468
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
EST: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAG GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
genomic: CCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGgttccttatc ... atcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACA
cttcttcattacatgtactattaattgtaatacttcgttcgctggatcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG
tattaat putative branch site (score: 2)
tcttttc putative PPT
tactattaattgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaaattttctgatgcaagatctgtttcacattggtggttgcttcttcttcattacatgtactattaattgtaatacttcgttcgctggatcttttcagGTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG
- - - - - - - tgcaaga
- - - - - - - - - - - ctgtttc
- - - - - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtac