Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgaaaatgcgactcgatctgacgagttcttaacctgattttgctccttcactaatgactctcactcactgtgttgtgtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCAGAGATCAAAGCCTTGAGGCTCTCCGAACGACTCAGAGAAAAGGCCGTTGAAGAG

Basic information

species Glycine max
transcript GLYMA05G34560.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727056|gb|BW680336.1|BW680336
EST:     TTCGGATCCGGTGAAGGTGGAGCTTAATCGCTTGGAGAATGAAGTGAGAG                         ATAAGGACAGAGAATTATCAGAAGCGCAGGCAGAGATCAAAGCCTTGAGGC
genomic: TTCGGATCCGGTGAAGGTGGAGCTTAATCGCTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCAGAGATCAAAGCCTTGAGGC
EST: gi|298189617|gb|HO038020.1|HO038020
EST:     TTCGGATTCGGTGAAGGTGGAGCTTAATCGCTTGGAGAATGAAGTGAGAG                         ATAAGGACAGAGAATTATCAGAAGCGCAGGCAGA
genomic: TTCGGATCCGGTGAAGGTGGAGCTTAATCGCTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCAGA
EST: gi|207710643|gb|GD691327.1|GD691327
EST:     TTCGGATCCGGTGAAGGTGGAGCTTAATCGCTTGGAGAATGAAGTGAGAG                         ATAAGGACAGAGAATTATCAGAAGCGCAGG
genomic: TTCGGATCCGGTGAAGGTGGAGCTTAATCGCTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctgattttgctccttcactaatgactctcactcactgtgttgtgtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCAGAGATCAAAGCCTTGAGGCTCTCCGAACGACTCAGAGAAAAGGCCGTTGAAGAG
                              cactcac  putative branch site (score: 2)
     atttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgaaaatgcgactcgatctgacgagttcttaacctgattttgctccttcactaatgactctcactcactgtgttgtgtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCAGAGATCAAAGCCTTGAGGCTCTCCGAACGACTCAGAGAAAAGGCCGTTGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA