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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgttaggttaccctgcttatctctcaaattattttactaattgattcattctgcaattccagAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG

Basic information

species Glycine max
transcript GLYMA05G34400.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34400.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G16020.2 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------------------------------------------------------------------------gtttgtttgttaggttaccctgcttatctctcaaattattttactaattgattcattctgcaattccagAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG
                                                                                                              | | |||  |       |  ||   ||||     ||  ||||     ||| |     ||   | | |||| | ||||| || ||||| || || || || |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| || |||
gtcagctgctatagattcttcttctttttgaacactgtgagatgtgtttttacaattgctggtgatctagatttggttgcatttgtgacttgttcgataaattaagtcagggtcgttaatcgatagtctgtgtagatcttcttcat-gttttgaggcttggtgtga-ctattaatgcagACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGATCGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATG

upper sequence: GLYMA05G34400.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G80910.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------------------------------------------------------------gtttgtttgttaggttaccctgcttatctc-tcaaattattttactaattgattcattc--tgcaattccagAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG
                                                                                  ||||   ||||  |  |  | | | | |  |    |  |  |   |  || || ||    |  ||   |||| | ||||| || ||||| || || || || || |||||||| |||||||| ||||||||||| |||||||| |||||||||||||| ||||||
gttagctactagagattttccttctttacacagatttttcgagttcatggattgattgatgttgtctcatgttcacataaattttgagcgttat-tagcttttcctgtattgttgggtgttcctgagacgtggtttatggaatataaacacagACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATG

upper sequence: GLYMA05G34400.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g06030.t01 (Vitis vinifera), 3'ss of exon 1
----------------------------gtttgtttgttaggttaccctgcttatctctcaaattattttactaattgattcattctgcaattc---cagAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG
                             |   ||  | |  ||  |||  || ||| |    |    ||| | |  |    |   |    ||    ||||||||| || ||||||||||| || || || || |||||||| || ||||||||||||||  |  |||| || || ||||| ||||| ||||||
tgatttgatttccatgtggtgtccaaacatgccttgatcaatttttcctcattgtctattgtttccagttatttaaaggcataacatcggttttgtgcagAATCTTTTCTCCAGAGGCTGCTTGTGAGGTTATAGAAGCAGAGAGGCATTCTCATGTTTTTCATCAGGCTGAGCCAGATATTTGGATGGTCATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197699|gb|HO045178.1|HO045178
EST:     AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAG                         AATCTTCTCGCCAGAGGCTGGCCTGCGACGTCATCGAAGCAGAAAGACATT
genomic: AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGgtttgtttgt ... gcaattccagAATCTTCTCGCCAGAGGCT-GCCTGCGACGTCATCGAAGCAGAAAGACATT
EST: gi|6482462|gb|AW201719.1|AW201719
EST:     AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAG                         AATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTC
genomic: AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGgtttgtttgt ... gcaattccagAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTC
EST: gi|298178758|gb|HO024493.1|HO024493
EST:     AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAG                         AATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTC
genomic: AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGgtttgtttgt ... gcaattccagAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTC
EST: gi|298196439|gb|HO041182.1|HO041182
EST:     AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAG                         AATCTTCTCGCCAGAGGCTGGCCTGCGACGTCATCGAAGCAGAAAGACATT
genomic: AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGgtttgtttgt ... gcaattccagAATCTTCTCGCCAGAGGCTG-CCTGCGACGTCATCGAAGCAGAAAGACATT
EST: gi|18735130|gb|BM528581.1|BM528581
EST:     AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAG                         AATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTC
genomic: AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGgtttgtttgt ... gcaattccagAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTC
EST: gi|298194957|gb|HO043429.1|HO043429
EST:     AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAG                         AATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTC
genomic: AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGgtttgtttgt ... gcaattccagAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTC
EST: gi|298185750|gb|HO028061.1|HO028061
EST:     AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAG                         AATCTTCTCGCCAGAGGCTGGCCTGCGACGTCAACGAAGCAGAAAGACATT
genomic: AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGgtttgtttgt ... gcaattccagAATCTTCTCGCCAGAGGCTG-CCTGCGACGTCATCGAAGCAGAAAGACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaccctgcttatctctcaaattattttactaattgattcattctgcaattccagAATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG
                tcaaattattttacta  TA-rich tract