Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaccccccactcttcatcccctgaattaacttcaatcaatgttttatttcttaatgactactcattctatcatctaatgcctctgccaccaaatttatgtgctaatttttcgtggttttagGCAACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAGTCATACTTAAAAGGTGATATTGGCAAGGCAT

Basic information

species Glycine max
transcript GLYMA05G33770.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33770.2 (Glycine max), 3'ss of exon 1
lower sequence: AT1G18260.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaacaccccccactcttcatcccctgaattaacttcaatcaatgtttt-atttcttaatgactactcattctatcatctaatgcctctgccaccaaatttatgtgctaatttttcgtggttttagGCAACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAGTCATACTTAAAAGGTGATATTGGCAAGGCAT
                    ||    |||||   ||  | || | |    |  |||  |    |  | |    ||  | |  |     |||      | ||   |   | |||     ||||  |||| ||| || | || || ||||| |||||  |||| || ||||||||| | |||||||||||||| ||  | ||||||||||||||| | || ||||| |
--------------------tcttaggaattttttttgagcagtttggagacatctccagcgttgttgagagaatt-tgtggtttaattgcttgttcacttccatcacatttt-----ggttgcagGCGACTTCATTTTATAAGCTAGTAGCAGAAAGGGGGCCGTGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCTTACTTAAAAGGTGATGTGGGTAAGGCTT

upper sequence: GLYMA05G33770.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g02280.t01 (Vitis vinifera), 3'ss of exon 3
gtaacaccccccactcttcatcccctgaattaacttcaatcaatgttttat-ttcttaatgactactcattctatcatctaatgcctctgccaccaaatttatgtgctaatttttcgtggttttagGCAACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAGTCATACTTAAAAGGTGATATTGGCAAGGCAT
                         ||   | | ||   |   | ||| || ||| | |||| |   | |   ||     |   | |||         |||||  | | | || |  ||  || |||| |||||| | ||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||| ||||||||||| | || ||||| |
-------------------------tgttattatttgtttttttttttcatattcattatgaatttccttgagatgcataagcccatctatgtagctgtttata-gttgagttctactgcgttcagGCTACTGCATTATACAAACTAGTTGCAGAACGGGGACCATGGAGTTCCTTGTCTAGATGGGCACTGGAGTCATACCTAAAAGGTGATGTGGGGAAGGCGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303881|gb|FG998233.1|FG998233
EST:     TCGCTAAGATTTTCCATACTGGTCTTGGCTTCAAGAAGAATATTCCCTTG                         GCAACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTG
genomic: TCGCTAAGATTTTCCATACTGGTCTTGGCTTCAAGAAGAATATTCCCTTGgtaacacccc ... gtggttttagGCAACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatcatctaatgcctctgccaccaaatttatgtgctaatttttcgtggttttagGCAACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAGTCATACTTAAAAGGTGATATTGGCAAGGCAT
                                 tgctaat  putative branch site (score: 2)
                                       tttttcgt  CT-rich tract
                        aaatttatgt  TA-rich tract