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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcttttatgtttgtgtgattcatgcaaatatgtgtgaaaactgaaaacttgtattccggcacattaattaatgttagattattttttatgttctagatagaatttcgtttatagcatctagttgctcctcgttgtagttattatcctcttcttttatggtgaaaaaatgaacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTGACTAGTGACCATGACAACGCGTTTC

Basic information

species Glycine max
transcript GLYMA05G33630.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33630.1 (Glycine max), 3'ss of exon 1
lower sequence: AC202435.3_FGT003 (Zea mays), 3'ss of exon 6
gtttgcttttatgtttgtgtgattcatgcaaatatgtgtgaaaactgaaaacttgtattccggcacattaattaatgttagattattttttatgttctagatagaatttcgtttatagcatctagttgctcctcgttgtagttattatcctcttcttttatggtgaaaaaatgaacttttc--agATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTGACTAGTGACCATGACAACGCGTTTC
                                                                                 |       | |  |   |  | |||    ||| | |  || |   |       | | ||  || |||  |   | |      |    ||   |  |||    ||||||||| ||| || |||||||| ||||||||||||||  | ||||| || |||||||||||  | || || || |   | |  || ||| | || ||| 
-----------------------------------------------------------------------------acgcacgggcactgacctataatgttgaa----gttcagaatatttgact----taggatctaactaatatgtttggcctgggaaatttgcaatcaatttttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCACGACCAGGCATTTA

upper sequence: GLYMA05G33630.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G351232_T01 (Zea mays), 3'ss of exon 8
gtttgcttttatgtttgtgtgattcatgcaaatatgtgtgaaaactgaaaacttgtattccggcacattaattaatgttagattattttttatgttctagatagaatttcgtttatagcatctagttgctcctcgttgtagttattatcctcttcttttatggtgaaaaaatgaacttttc--agATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTGACTAGTGACCATGACAACGCGTTTC
                                                                      |   | |     | |  | | |||||      | | ||  |  |||   |  |||         | | ||  || |||  |   | |      |    ||   |   ||    ||||||||| ||| || |||||||| ||||||||||||||  | ||||| || |||||||||||  | || || || |   | |  |  ||| | || ||| 
----------------------------------------------------------------------acgcacgggcactgacctataatgtt------aaagttcagaatatttgacttag---------gatctaactaatatgtttggcctgagaaatttgcaatcaattcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCGCGACCAGGCATTTA

upper sequence: GLYMA05G33630.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G152447_T01 (Zea mays), 3'ss of exon 1
gtttgcttttatgtttgtgtgattcatgcaaatatgtgtgaaaactgaaaacttgtattccggcacattaattaatgttagattattttttatgttctagatagaatttcgtttatagcatctagttgctcctcgttgtagttattatcctcttcttttatggtgaaaaaatgaacttttc--agATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTGACTAGTGACCATGACAACGCGTTTC
                                                                               ||||| ||||| |      | | |   ||    ||  || || |  |||      | | ||  || |||  |   | |      |    ||  ||   ||    ||||||||| ||| || |||||||| ||||||||||||||  | ||||| || |||||||||||  | || || || |   | |  |  ||| | || ||| 
-------------------------------------------------------------------------------agattttttttaaaaa---aaacaatgttgaagtt-cagaatat--ttgacttaggatctaactaatatgtttggcctgagaaatttgcaatcgattcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCGCGACCAGGCATTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298175884|gb|HO015289.1|HO015289
EST:     GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAG                         ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
genomic: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgctttt ... aacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
EST: gi|298186779|gb|HO037412.1|HO037412
EST:     GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAG                         ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
genomic: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgctttt ... aacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
EST: gi|192322964|gb|FK016695.1|FK016695
EST:     GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAG                         ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
genomic: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgctttt ... aacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
EST: gi|298192643|gb|HO033077.1|HO033077
EST:     GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAG                         ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
genomic: GTGACTGGGGAAGAAGAGGTGCTTACAACCAATCACTAGTTGCTTTCCAGgtttgctttt ... aacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctcgttgtagttattatcctcttcttttatggtgaaaaaatgaacttttcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTGACTAGTGACCATGACAACGCGTTTC
                                               cttttc  CT-rich tract
                                     aaaaaatgaactttt  TA-rich tract