Sequence
atgc intronic sequence ATGC exonic sequence...gttatcatggaatttgaaagcaacgaaattaatctgaagacaaagaacaaggtggaccgatggagaatggtgaaatgataaaattttgaaaatgaaacagGTGGGGCCAAGATCGAAGAAGGACAGAGAGAGATTCCCGCCAAACAATGTGTTGCTAACGTTGGCGGGGGCAGGGCTACTATGGATGGGATGGGCAGGTT
Basic information
species | Glycine max |
transcript | GLYMA05G33010.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G33010.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0031g02950.t01 (Vitis vinifera), 3'ss of exon 1
gttatcatggaatttgaaagcaacgaaattaat--ctgaagacaaagaacaaggtggaccgatggagaatggtgaaatgataaaattttgaaaatgaa-acagGTGGGGCCAAGATCGAAGAAGGACAGAGAGAGATTCCCGCCAAACAATGTGTTGCTAACGTTGGCGGGGGCAGGGCTACTATGGATGGGATGGGCAGGTT
| ||| | ||| | | | |||||||| ||||| || | || | || | | |||| | | ||| |||||||||||||||||| | |||||||| ||||||||||| ||||| |||||| |||| | | |||||||||| ||||| || ||| |||||||||| || |
ttcatcgtcc--ttttgattcttcaaaattaatgtttgaagttgaaagattag-taagtgtgtgaacgtgaaggtgatgaaggagatggtgtgatgtgtacagGTGGGGCCAAGATCAACCAAGGACAGGGAGAGATTCCCCCCAAATAATGTGCTGCTGATGCTGGCGGGGGCGGGGCTGCTGTGGTTGGGATGGGCCGGGT
upper sequence: GLYMA05G33010.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0031g02990.t01 (Vitis vinifera), 3'ss of exon 1
----gttatcatggaatttgaaagcaacgaaattaatctga---agacaaagaacaaggtggaccgatggagaatggtgaaatgataaaattttgaaaatgaaacagGTGGGGCCAAGATCGAAGAAGGACAGAGAGAGATTCCCGCCAAACAATGTGTTGCTAACGTTGGCGGGGGCAGGGCTACTATGGATGGGATGGGCAGGTT
|||| || || | || | || || || || | | | | | | | | | | || || || || | || || | | |||||||||||||||||| || | |||||| ||||| || || |||||||||||| |||| | | | || ||||| ||||| || ||| ||||||||||||| |
aggctttattttgaaaataaaaggaaa--aatttcatttcacctggtagtggtatatgataggtctgtgaagg-tgatgggg----gagatggtgtgatgtatacagGTGGGGCCAAGATCCAAAAGGGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCTGGGGCGGGGCTGCTGTGGTTGGGATGGGCAGGGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaaggtggaccgatggagaatggtgaaatgataaaattttgaaaatgaaacagGTGGGGCCAAGATCGAAGAAGGACAGAGAGAGATTCCCGCCAAACAATGTGTTGCTAACGTTGGCGGGGGCAGGGCTACTATGGATGGGATGGGCAGGTT
tgaaatgataaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatcatggaatttgaaagcaacgaaattaatctgaagacaaagaacaaggtggaccgatggagaatggtgaaatgataaaattttgaaaatgaaacagGTGGGGCCAAGATCGAAGAAGGACAGAGAGAGATTCCCGCCAAACAATGTGTTGCTAACGTTGGCGGGGGCAGGGCTACTATGGATGGGATGGGCAGGTT
- - -catggaa
- - - - - - - - - - - - gaaattaa
- - - - - - - - - - - - - - - - - - - - - aagaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggtg