Sequence
atgc intronic sequence ATGC exonic sequencegttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
Basic information
species | Glycine max |
transcript | GLYMA05G32220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
------------------------------------gttagtac--ttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||| | || || | || || | ||| |||| | ||| || |||| | | | | ||| || | || || ||||| |||| || ||||||||||||||||| ||||||||||||||||| || ||||| ||| | || || ||||||||||| |||||||| ||||| || |||||||
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttg-tagcaccca----acgaattgatcatt--tcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 2
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagtt-cataactgaatctttgatt---ttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
| || ||| | |||| ||| | ||||| | || || | | ||| | ||||| | |||| || |||||||| |||||||| |||||||| || |||||||| ||||| || |||||||| || ||||| ||||||||||| ||||| |||||||| || |||||||
-------gtcaggaacttcatcttttaaaccatctat-----catctccaagactccaactgcatttttaccaatttgaattccttaaaattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTTGGTCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGGCAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 2
----------gttagtacttagcg--gctttgttttttg----tttcatgtgcttgtgcat-ctgctagccttgagttcataactgaatctt--tgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| | |||| || || ||||| || | || | || | || || ||||| | | | | || |||| || | | ||||||| |||||||| |||||||||||| | ||||| || || |||||||||||||| || ||||| || || ||||||||||||||||| ||||| ||||
gtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcatttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 2
gttagtacttagcggctttgttt-tttgtttcatgtg-cttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||| | | | |||| || |||| | | | || | | | | | |||| || | | | | | ||||||| ||||||||||||||||| ||||| || || || || ||||| ||||| || ||||| ||||||||||| |||||||| ||||| ||||| ||||
gtttgattcttataccattgtccattcgttttttttaattcatggaatgagttgttcaaaaataataat--aactctcactctctctct-----agGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| || | ||| || |||| | | | | || || |||| | ||| || | | |||| | ||||||| || ||||||||||||||||| || ||||| ||||| || || ||||| || |||| || ||||| ||||| |||||||||||||| ||||||||||
gtggttatcctg-aacttagtcttttcagcaaagcggt-atgttcctcatagctt---------aacggatcacct--tcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| | || || ||| | || | | | || || | | ||| | || || | || |||| | ||| ||||||| || ||||| |||||||| || ||||| || || || |||||||||||||| ||||| ||||| ||||||||||| || ||||| || |||||||
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatg---tagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 2
---gttagtacttagcggctttgttt-tttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
| || || | | | ||| ||||| || | | | | || | ||| || | ||| | ||| |||||||| |||||||| || ||||| ||||||||||| || || ||||| || || || || || ||||| ||||| |||||||| ||||| || |||||||
gttcgtggtgctcattcgtagtatttctttgtagcagttatccccatgtttatgtgatttaatcgtata-ctttacttttcttgcgaattgctggcagGCTGGGTTTGCTGGGGACGATGCGCCCAGGGCTGTTTTCCCTAGTATCGTGGGGCGCCCCCGTCACACCGGTGTGATGGTTGGTATGGGGCAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 3
gttagtacttag-cggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttg-attttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| || | | | || | |||| || | || ||| ||| | | | || | || | ||||||| |||||||| || ||||| || |||||||| || || |||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||
gtcagccccccctcccccctgacccccaacttg---atttgtacaacc-ttatttccaagtatgccactaattatgtgtaccttctactcttctagGCTGGTTTTGCTGGCGACGATGCACCAAGGGCTGTTTTCCCTAGTATTGTTGGCCGTCCTCGCCACACTGGTGTTATGGTAGGGATGGGACAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 2
------gttagtacttagcggctttgtttttt---gtttcatgtgcttgtgcatctgctagccttgagttcataactga-atctttgatttt-----aatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| |||| ||| | | | | | || | | | | ||| || || || | || | || | | ||||| || | | ||||||| |||||||| |||||||||||| | ||||| || || ||||| ||||| || || || ||||||||||| |||||||||||||| || |||||||
gtaattgtggccacttggcgtcatattctctgcagattcctttttttcaggcagcttttataatttaattttcagtcgatgttcattattttccccccatctcttatagGCTGGCTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCAAGTATAGTTGGTCGTCCACGCCACACTGGTGTCATGGTTGGGATGGGACAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 2
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaa-tatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
| | || | || | || | |||| | ||| || | | | ||| | | | ||||||| |||||||| |||||||| || ||||| || || || || ||||||||||| ||||| ||||||||||| ||||| |||||||| || ||||| |
-----------------------gtcagcccccgtccctgac--tttgacaacctttacttc-caaatatgccactaattatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G067985_T06 (Zea mays), 3'ss of exon 2
-------gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaa-tatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
| | | | || | || | | || | || | |||| | ||| || | | | ||| | | | ||||||| |||||||| |||||||| || ||||| || || || || ||||||||||| ||||| ||||||||||| ||||| |||||||| || ||||| |
tgtctgcgacaatggc-actggaatggtcaaggtcagcccccgtccctgactttgacaacctttacttc-caaatatgccactaattatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G067985_T08 (Zea mays), 3'ss of exon 1
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
| | ||| | || ||||| || | || | | ||| | | || | | | | ||||||| |||||||| || ||||| || ||||| || || || || ||||||||||| ||||| ||||||||||| ||||| |||||||| || |||||||
---------------gtcagccccttggccc-tg-acttgtacaacctttatttccaaatatgccactaa--ttatgtctgtccttt-----agGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 2
-------gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
| | || || | | | |||| || ||||| | || | | | || | | || || ||| || | | | |||||||| ||||||||||||||||| ||||| || || || || ||||| || ||||| ||||| ||||| ||||| |||||||| ||||| || ||||| |
gttcgatgctcgttct-atctaccatgttcattcattcatct-ctgaaacctgtaaaggcagttgttgcagaa-tgaccagcccatgcttctctctg-cagGCTGGCTTTGCTGGTGATGATGCGCCCAGAGCAGTGTTCCCTAGTATAGTCGGCCGCCCTCGGCACACGGGTGTGATGGTTGGAATGGGCCAGAAGGACG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
| | | || ||||| ||||| | || | ||| | ||| | |||| | || | |||||||| ||||||||||| ||||| || |||||||| || || || |||||||| || || || |||||||| || |||||||| ||||| || |||||||
-------------gtttgtagttcttgttcacgctgctt-catgttcagtaacattgttctgttaatttaatcacatcacaaactactgg-cagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 2
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||| ||| || | || | | ||||| | || | | | || | | || || || | | | | | ||| | |||||||| ||||||||||| ||||| || |||||||| || || || ||||| || || || || ||||||||||| |||||||| ||||| || |||||||
gtttgtagttcttgttcatgctggt-acttcatattctgcaacctttttctgc--taatttaatcacacgttttcttacaa-actattgg-cagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTCGGACGCCCCCGTCACACTGGTGTGATGGTTGGCATGGGGCAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 2
------gttagtacttagcggctttgttttt--tgtttcatgtgctt--gtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| ||| || | | | | | || ||| | | || | || || ||| || ||| | | || ||| || | | ||||||| |||||||| ||||| ||||| | ||||| || || ||||| ||||| || || || ||||||||||| |||||||||||||| || |||||||
gtaactgtagtcgcttggcatcatattctctaatgattcctctttttccatacagcttttagattttcagtcaatgttaagcactt--tttccatctcttatagGCTGGCTTTGCTGGAGATGACGCTCCACGTGCTGTTTTCCCAAGTATAGTTGGTCGTCCACGTCACACTGGTGTCATGGTTGGGATGGGACAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G126010_T03 (Zea mays), 3'ss of exon 1
gttagtacttagcggctttgttttttgtttcat-gtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||| || | | || |||| || | | | | ||| | ||| | || | | || | || || | ||||| || || |||||||||||||| || || |||||||| ||||| ||||| || |||| || ||||| ||||| ||||| || ||||| ||||||||||
gttgttatctcgttcagaagtcttttccaacaaagcaactctactcctg-tgacct--aattgttgctcaactcctcaatattta-------cagGCCGGTTTCGCTGGTGATGATGCGCCAAGAGCTGTCTTCCCCAGCATTGTGGGAAGACCACGCCACACCGGTGTCATGGTCGGCATGGGCCAAAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G053284_T01 (Zea mays), 3'ss of exon 2
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||| || || | | | | | ||| ||| || || ||| | |||| || ||| || || ||||||| || || |||||||| || || || ||||| ||||||||||| || || ||| | || || |||||||| || ||||| || ||||| ||||||||||
gttcgttct---cctgtccagcagccaatccttttgcctgtctattcatta---ctgatctaataaactgatgg--gatcttgatgccaaacagGCAGGTTTCGCTGGTGACGACGCGCCGAGGGCAGTCTTTCCCAGCATCGTAGGCAGGCCACGCCACACTGGCGTGATGGTGGGCATGGGCCAAAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctt-tgattttaatatgg-aacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| ||| | | | || || | | ||| | | ||| || | ||| | ||||||| ||| |||||||||| ||||||||||||||||| || || || || || || ||||||||||| || ||| | ||||||||||| |||||||| |||||||| || ||||
gtgagt--tagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| || | || |||| | | | ||| || ||| || | | || | | | | | ||||||||||| ||||| |||||||||||||| || || || |||||| ||||||| |||||| |||| |||||| |||||||||||| ||| || ||||
---------------gttagtctcttctttcttactttaaggattctcttaattttgg---caagatttgatacaagttcct----ttgtgcagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 3
----gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttca---taactgaatctttgattttaatatgga---acagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||| | ||| |||| | | | || | |||| ||||| | | ||| | | | | || || ||| | | |||||||||||||| |||||||||||||||||||| || ||||| |||||||| || || || | ||||||||||| |||||||||||||||||||| ||||
gtctgttgtttctttcttgcttgatatgcagatttgttgtgttgtttg-ctgctcctcaaatgctcaatttgaataagctttccatgttatgctttatatgcagGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 1
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| ||| || | | | || || | | | | || | |||||||||||||| || || |||||||||||||| || |||||||| ||||| ||||| || ||||| || || |||||||| ||||| || |||||||
-------------------------------gtgcgctcctggcgcggtttcttgtggattttgatccggggggtgtgttcttg-------cagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG
upper sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 1
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| ||| || | | || || | | | | |||| |||||||||||||| || || |||||||||||||| || |||||||| ||||| ||||| || ||||| || || |||||||| ||||| || |||||||
-------------------------------gtgcgctcctggcgcgatttcttgtggattttgatccggggggtgtgtttttg-------cagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208112558|gb|GD908419.1|GD908419EST: CTGAGGATATTCAA-CCCTTGTTTGTGACAATGGAACTGGAATGGTCAAG GCTGGA-TTGCTGGAGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGgttagtactt ... tatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTT
EST:
gi|14999958|gb|BI320772.1|BI320772EST: CTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAG GCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGgttagtactt ... tatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
aatctttgattttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG