1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccttcaacgactctagggttgtttattttttttttctgaactgaaattcgatgattgtggtcactgtaactgacggctcctatgaattttttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGAAGCAGATGAGGCTCGCCGGTGACGTGGCAGGTACCAGAAAGGCGGCTA
species | Glycine max |
transcript | GLYMA05G32030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|19271260|gb|BM887516.1|BM887516
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|18039945|gb|BM308239.1|BM308239
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|24206051|gb|BU965304.1|BU965304
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|26047818|gb|CA784480.1|CA784480
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|37997022|gb|CF808611.1|CF808611
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|17519815|gb|BM188857.1|BM188857
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: CCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|7925406|gb|AW831371.1|AW831371
genomic: CCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|23731285|gb|BU763760.1|BU763760
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|192295223|gb|FG986942.1|FG986942
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGEST: gi|192309222|gb|FG999449.1|FG999449
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
EST: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATG GCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
genomic: AATTTCACGACTCCTTCGGAGATCTCTCTCTCGCCCATAATCCAACCATGgtaccctctc ... ttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAG
attcgatgattgtggtcactgtaactgacggctcctatgaattttttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGAAGCAGATGAGGCTCGCCGGTGACGTGGCAGGTACCAGAAAGGCGGCTA
aactgac putative branch site (score: 2)
ttttttattt putative PPT
tatgaattttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcaacgactctagggttgtttattttttttttctgaactgaaattcgatgattgtggtcactgtaactgacggctcctatgaattttttatttgtagGCAAATACGGGAAATTTAGACGCGGCGATAGAGCAATTGCTGAACGTGGAGAAGCAGATGAGGCTCGCCGGTGACGTGGCAGGTACCAGAAAGGCGGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG