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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacattcttatttcttcacaataatattggaaacaacctctgttgttgtcgtttttttttctctgtttcaaaatttgacgctttgtttgttgaatactaaccaattcagttagTTTGTTACTTGGTCAGAGGTGGAATCGTTGGGTCTTAATGGGTCCCTTTTCACTATCCGTTATGGTTAATGACTCTGCCATTTCATTACCAG

Basic information

species Glycine max
transcript GLYMA05G31870.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12689671|gb|BG156007.1|BG156007
EST:     CGCTACTCTCATCTCTTCACTTCCCTTCTATCACTCTTCTCACTTCTGAG                         TTTGTTACTTGGTCAGAGGTGGAATCGTTGGGTCTTAATGGGTCCCTTTTC
genomic: CGCTACTCTCATCTCTTCACTTCCCTTCTATCACTCTTCTCACTTCTGAGgtaaacattc ... attcagttagTTTGTTACTTGGTCAGAGGTGGAATCGTTGGGTCTTAATGGGTCCCTTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctctgtttcaaaatttgacgctttgtttgttgaatactaaccaattcagttagTTTGTTACTTGGTCAGAGGTGGAATCGTTGGGTCTTAATGGGTCCCTTTTCACTATCCGTTATGGTTAATGACTCTGCCATTTCATTACCAG
                                    tactaac  putative branch site (score: 0)
       tttcaaaattt  TA-rich tract