Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcatatagtcccttcatgtctctttttcatcattttgtttatttaagaaattatgccttgtaattgatgtgtgattcaaattttgaatgtgtgtgtagCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATT

Basic information

species Glycine max
transcript GLYMA05G31630.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31630.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G39660.1 (Arabidopsis thaliana), 3'ss of exon 1
--aatcatatagtcccttcatgtctctttttcatcattttgtttatttaagaaattatgccttg--taattgatgtgtgatt--caaattttgaatgtgtgt-gtagCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATT
  | |||| |||  ||   |         |       |||||  | |||  |          ||    || ||| | |||||    | | ||||   | ||| | |||| || ||||| |||||||||||||| ||  | |||||||| ||||| ||||| || || ||||| ||||| |||||||| ||||| || ||||| || |
cgattcat-tagctcccgaagac------taagaggatttgtggacttagaagccagcttgatgatccatggatctctgattattcagtgttgatgttatgttgcagCTTAACATCGTTGAAGGGAAGATGCAGTACTTGTATGATGAGAGTGGTAGGCGATATCTGGATGCCTTTGCTGGAATAGTCACTGTGTCGTGCGGTCACT

upper sequence: GLYMA05G31630.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 1
aatcatatagtcccttcatgtctctttttcat-cattttgtttatttaagaaattatgccttgtaattg-atgtgtgattcaaattttgaatgtgtgtgtagCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATT
 |||||| |     |  |||       || ||  | |  ||  |  ||| ||||     |     |||| ||   || |  || |||| | | |||    || | ||| | || |||||||||||||| ||| | | |||||| | ||| | ||| || |||||||| ||||| |||||||||||||| || || || ||||
-atcata-aactaatatatgaacagacttgatgtactcagtacacctaataaatatcatcccaacattgcatacatgttctaacttttcattatgtacacagGTCAATGTTGTTGAAGGGAAGATGCAGTATTTGTTTGATGAGAATGGCAAGCGCTATCTTGATGCCTTTGCTGGAATAGTTACTGTGTCATGTGGGCATT

upper sequence: GLYMA05G31630.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ12384 (Selaginella moellendorffii), 3'ss of exon 1
aatcatatagtcccttcatgtctctttttcatcattttgtttatttaagaaattatgccttgtaattgatgtgtgattcaaattttgaatgtgtgtgtagCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATT
                                         |   |  ||| || || |||    ||||||  ||  |  | |   |   || | || |||| ||||| |||||||||||||||||||||||||| ||||| ||||| | | | ||| | ||||| ||||| || || || ||||||||    || ||||
----------------------------------------gtgagtgtgaatttgtgtcttt---ttgatggatggattga-tcgcgggcgtct-tgcagCTCAATATTGTGGAAGGGAAGATGCAATATCTTTACGATGAGAGTGGAAAGAGGTACTTGGATGCGTTTGCTGGGATTGTCACTGTTTCCGTGGGTCATT

upper sequence: GLYMA05G31630.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ33785 (Selaginella moellendorffii), 3'ss of exon 1
aatcatatagtcccttcatgtctctttttcatcattttgtttatttaagaaattatgccttgtaattgatgtgtgattcaaattttgaatgtgtgtgtagCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATT
                                         |   | |||| || || | |    ||||||  |   || | |   |   || | || |||| ||||| |||||||||||||||||||||||||| ||||| ||||| | | | ||| | ||||| ||||| || || || ||||||||    || ||||
----------------------------------------gtgagtgagaatttgtgtcctt---ttgatggatcgatcga-tcgcgggcgtct-tgcagCTCAATATTGTGGAAGGGAAGATGCAATATCTTTACGATGAGAGTGGAAAGAGGTACTTGGATGCGTTTGCTGGGATTGTCACTGTTTCCGTGGGTCATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208197183|gb|GD999370.1|GD999370
EST:     AGCGCAAA-CGTTCCTCGGTCCTTCCGTCTTCCACTACTATAAGAAACCT                         CTGAATATCGTGGA
genomic: AGCGCAAAACGTTCCTCGGTCCTTCCGTCTTCCACTACTATAAGAAACCTgtgagtctcc ... gtgtgtgtagCTGAATATCGTGGA
EST: gi|208302368|gb|GE100427.1|GE100427
EST:     CCGTCTTCCACTACTATAAGAAACCT                         CTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGG
genomic: CCGTCTTCCACTACTATAAGAAACCTgtgagtctcc ... gtgtgtgtagCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGG
EST: gi|208029480|gb|GD827896.1|GD827896
EST:     ACTATAAGAAACCT                         CTGAATATCGTGGAAAGGAAGATGCAATATCTTTATGATGATAGTGGGAGG
genomic: ACTATAAGAAACCTgtgagtctcc ... gtgtgtgtagCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagaaattatgccttgtaattgatgtgtgattcaaattttgaatgtgtgtgtagCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATT
                  aattgat  putative branch site (score: 4)
                              attcaaattttgaat  TA-rich tract