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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccactttcctccatttctatcacccaattccctttctatgcattatgctattttttttctctgtcaatatgtggacaccatgtgtttgttgaaatgccccaatgcagttttcttagttttaggactagaattgtctgtaatattcattacccgaattcctgaatttggaagtgatgtttttttgcagTTATACTAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTAATGTTCCGACAGTGGTTGCAATTAACGAGTCCTTTCTTAATCAATCGAGGAATTCC

Basic information

species Glycine max
transcript GLYMA05G30630.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30630.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G13180.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaccactttcctccatttctatcacccaattccctttctatgcattatgctattttttttctctgtcaatatgtggacaccatgtgtttgttgaaatgccccaatgcagttttcttagttttaggactagaattgtctgtaatattcattacccgaattcctgaatttggaagtgatgtttttttgcagTTATACTAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTAATGTTCCGACAGTGGTTGCAATTAACGAGTCCTTTCTTAATCAATCGAGGAATTCC
                                                                                      ||  ||| ||        ||    ||   ||  || |  |  ||   |  ||  | | || |   |     |||| |   | ||   |||    | | |||||| |||||||| ||||| ||||| |||||||| |||||||||||||   | || ||||| |||||| | |||||||| ||| | |||||||| | || ||| 
--------------------------------------------------------------------------------------gtacgttcaa------tgataggtttgatttgtttatgcgcttaacgtgttcgatgaaatgctgcaattagattcattcttgtgtgtgtg----tgtattgcagGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTATCTTACCAACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgtaatattcattacccgaattcctgaatttggaagtgatgtttttttgcagTTATACTAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTAATGTTCCGACAGTGGTTGCAATTAACGAGTCCTTTCTTAATCAATCGAGGAATTCC
                                          tgttttttt  CT-rich tract
     taatattcatta  TA-rich tract