1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtttgttttcatcactgcttggttttgattttgaaagatggtgttaaatctgtgtacactttaacaattatctatttgattcttcattcttgctcccagCTATGGATTCTATGCCTGATGCCATTCTCCAATGCATCTTGTCCCGAATCACCAATGCTCGTGACGTGTCATCTTGCAATTGTGTTTCCAAGAGATGGAA
species | Glycine max |
transcript | GLYMA05G30340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCAGATCTTTCCATTTCCATTATTAG CTATGGATTCTATGCCTGATGCCATTCTCCAATGCATCTTGTCCCGAATCAEST: gi|192324877|gb|FK016078.1|FK016078
genomic: TCCAGATCTTTCCATTTCCATTATTAGgtaagcctcg ... ttgctcccagCTATGGATTCTATGCCTGATGCCATTCTCCAATGCATCTTGTCCCGAATCA
EST: AGAAAGAGATTTCGGCTATGCCATCCAGATCTTTCCGTTTCCATTATTAG CTATGGATTCTATGCCTGATGCCATTCTCCAATGCATCTTGTCCCGAATCA
genomic: AGAAAGAGATTTCGGCTATGCCATCCAGATCTTTCCATTTCCATTATTAGgtaagcctcg ... ttgctcccagCTATGGATTCTATGCCTGATGCCATTCTCCAATGCATCTTGTCCCGAATCA
taaatctgtgtacactttaacaattatctatttgattcttcattcttgctcccagCTATGGATTCTATGCCTGATGCCATTCTCCAATGCATCTTGTCCCGAATCACCAATGCTCGTGACGTGTCATCTTGCAATTGTGTTTCCAAGAGATGGAA
ttcttcattcttgctc CT-rich tract
tttaacaattatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgttttcatcactgcttggttttgattttgaaagatggtgttaaatctgtgtacactttaacaattatctatttgattcttcattcttgctcccagCTATGGATTCTATGCCTGATGCCATTCTCCAATGCATCTTGTCCCGAATCACCAATGCTCGTGACGTGTCATCTTGCAATTGTGTTTCCAAGAGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
tgtttgt
- - - - - - -cactgct
- - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtac