1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtaattctggttggctcttgaatgacaaccttctgatacagcttgttataaaggtctattacttgtctcttggtttctaatagtaatttgtttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATGGTAATATTGCATTTACGACTCAAGAGGCTGGGAACTACCTTGCATGCT
species | Glycine max |
transcript | GLYMA05G30330.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|192325154|gb|FK019085.1|FK019085
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTCCATCACAAGGAGAACACAACACATEST: gi|298181707|gb|HO025882.1|HO025882
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298165642|gb|HO011691.1|HO011691
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298194557|gb|HO043029.1|HO043029
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCGGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|192314293|gb|FK007031.1|FK007031
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAGG GTGACGTCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|207801817|gb|GD775217.1|GD775217
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|151407142|gb|EV276957.1|EV276957
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATAACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298177574|gb|HO027241.1|HO027241
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAAAACACAACACATEST: gi|209712647|gb|BW684577.1|BW684577
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|208188003|gb|GD986817.1|GD986817
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: GTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|151394892|gb|EV264763.1|EV264763
genomic: GTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298173418|gb|HO016754.1|HO016754
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|193320567|gb|FK286494.1|FK286494
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GCGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|192314294|gb|FK007032.1|FK007032
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAGG GTGACGTCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298196518|gb|HO041261.1|HO041261
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAT GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|192322896|gb|FK014827.1|FK014827
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|151411095|gb|EV280906.1|EV280906
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTCCATCACAAGGAGAACACAACACATEST: gi|151405471|gb|EV275285.1|EV275285
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298178629|gb|HO024364.1|HO024364
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298163990|gb|HO013635.1|HO013635
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAG GTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
genomic: ACGTCGTTATCCCCAGTGATCACACCCACAACCCCACCATCGCCGTCAAGgtactctttt ... tttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
ttataaaggtctattacttgtctcttggtttctaatagtaatttgtttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATGGTAATATTGCATTTACGACTCAAGAGGCTGGGAACTACCTTGCATGCT
ttctaat putative branch site (score: 2)
tttgtttccttt putative PPT
tttctaatagtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctggttggctcttgaatgacaaccttctgatacagcttgttataaaggtctattacttgtctcttggtttctaatagtaatttgtttcctttagGTGACATCACCATATGGAAACAATCTTCATCACAAGGAGAACACAACACATGGTAATATTGCATTTACGACTCAAGAGGCTGGGAACTACCTTGCATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - -tggttgg
- - - - - - - - - tgaatga
- - - - - - - - - - - - - - ccttctg
- - - - - - - - - - - - - - - - - - - - gcttgtt