1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagatcaggttataatgttttagctggcggccatgtgcagtttctgttattttcatatttcatttggttaagtgttatgctaataatcagatgctgccagGGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAG
species | Glycine max |
transcript | GLYMA05G30150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCCCATCCTCAAGTCCAAGGCTGCCGCCGTCAAATGGGTCAAAGAATG GGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGEST: gi|192333661|gb|FK025772.1|FK025772
genomic: CGCCCCATCCTCAAGTCCAAGGCTGCCGCTGTCAAATGGGTCAAAGAATGgtattcccaa ... atgctgccagGGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATG
EST: CGCCCCATCCTCAAGTCCAAGGCTGCCGCTGTCAAATGGGTCAAAGAATG GGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGEST: gi|298163204|gb|HO011937.1|HO011937
genomic: CGCCCCATCCTCAAGTCCAAGGCTGCCGCTGTCAAATGGGTCAAAGAATGgtattcccaa ... atgctgccagGGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATG
EST: CGCCCCATCCTCAAGTCCAAGGCTGCCGCTGTCAAATGGGTCAAAGAATG GGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATG
genomic: CGCCCCATCCTCAAGTCCAAGGCTGCCGCTGTCAAATGGGTCAAAGAATGgtattcccaa ... atgctgccagGGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATG
gttattttcatatttcatttggttaagtgttatgctaataatcagatgctgccagGGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAG
tgctaat putative branch site (score: 2)
tttcatatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagatcaggttataatgttttagctggcggccatgtgcagtttctgttattttcatatttcatttggttaagtgttatgctaataatcagatgctgccagGGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAG
- - - - - - - - - - - gctggcg
- - - - - - - - - - - - - - - -catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttatgc