1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctcgagtgtcactccgtcactcacattcctccgccaaacaaaattccctatgtttgatttccatcatttcatcgattgattgtaactgtttattttcagGGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCTATTTGGATCTGTTCACGGACTTCATCTCCGTTTACAACACCTTCATGAA
species | Glycine max |
transcript | GLYMA05G29410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAG GGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCTEST: gi|6502251|gb|AW203624.1|AW203624
genomic: CAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAGgtctcttcac ... ttattttcagGGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCT
EST: CAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAG GGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCTEST: gi|192300473|gb|FG991485.1|FG991485
genomic: CAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAGgtctcttcac ... ttattttcagGGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCT
EST: CAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAG GGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCT
genomic: CAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAGgtctcttcac ... ttattttcagGGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCT
tccctatgtttgatttccatcatttcatcgattgattgtaactgtttattttcagGGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCTATTTGGATCTGTTCACGGACTTCATCTCCGTTTACAACACCTTCATGAA
ttgtaac putative branch site (score: 2)
tttattttc putative PPT
taactgtttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcgagtgtcactccgtcactcacattcctccgccaaacaaaattccctatgtttgatttccatcatttcatcgattgattgtaactgtttattttcagGGATTTCTCGCAAGACTCAAGAGCTCTACGCGATTGTGTTCGTGGCACGCTATTTGGATCTGTTCACGGACTTCATCTCCGTTTACAACACCTTCATGAA
- - - -tgtcact
- - - - - - - - - cactcac
- - - - - - - - - - - - - ttcctcc
- - - - - - - - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaactg