1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttccctctctccgccttcgcctgcttctgtataacgacattgaagtttcgttgattagtgagtttagtaacagtgttgattttgtgatgattcagTTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAAGGTATACCTGATGCTGCTGGGATACGTTCTACTGCGTGGAAG
species | Glycine max |
transcript | GLYMA05G28660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAATTGCTGGCCGAG TTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAAEST: gi|10846864|gb|BF069663.1|BF069663
genomic: TCAATTGCTGGCCGAGgttccctctc ... gatgattcagTTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAA
EST: GCTTTCGTTCCGCGCACGACGTGTCTCGCCAAGCTCAATTGCTGGCCGAG TTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAAEST: gi|207693503|gb|GD674154.1|GD674154
genomic: GCTTTCGTTCCGCGCACGACGTGTCTCGCCAGGCTCAATTGCTGGCCGAGgttccctctc ... gatgattcagTTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAA
EST: TCAATTGCTGGCCGAG TTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAAEST: gi|13481526|gb|BG510869.1|BG510869
genomic: TCAATTGCTGGCCGAGgttccctctc ... gatgattcagTTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAA
EST: GTCTCGCCAGGCTCAATTGCTGGCCGAG TTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAA
genomic: GTCTCGCCAGGCTCAATTGCTGGCCGAGgttccctctc ... gatgattcagTTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAA
tgaagtttcgttgattagtgagtttagtaacagtgttgattttgtgatgattcagTTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAAGGTATACCTGATGCTGCTGGGATACGTTCTACTGCGTGGAAG
tttagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccctctctccgccttcgcctgcttctgtataacgacattgaagtttcgttgattagtgagtttagtaacagtgttgattttgtgatgattcagTTGTCAAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAAGGTATACCTGATGCTGCTGGGATACGTTCTACTGCGTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG