Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgctgtgcttcccatttatacatggatgccttgcaaactcttctttaatgcttaaaaggttgtccttttatggtttccagAGGAAAGATAACTTTGAATCTGTCGTAATGGAGCATCTAAGAATGAATGGGGCATATTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATACCG

Basic information

species Glycine max
transcript GLYMA05G28630.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28630.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G12210.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------gtgtgctgtgcttcccat-ttatacatggatgccttgcaaactcttctttaatgcttaaaaggttgtccttttatggtttccagAGGAAAGATAACTTTGAATCTGTCGTAATGGAGCATCTAAGAATGAATGGGGCATATTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATACCG
                              || | || || ||       | |   || ||  |||     ||  | || |||   |    |  | |  ||| ||  || | ||| |||||| |  ||||| ||||| || ||||| ||||||||||||||||| ||||| |||||| | |||||||| ||  | || |  |||||       |
gtacctagaaactgtatagaacctttgctcgttttctctgtttatgtcactgtgattgtatagcttatgttcttcttttcaattgctttttgaattttatttaat--ttgctagAAGAAAGAGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCATACTGGGGACTCACCACTCTCGACTTACTTGACAAGCTCGGCTGTG

upper sequence: GLYMA05G28630.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G12210.2 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------gtgtgctgtgcttcccat-ttatacatggatgccttgcaaactcttctttaatgcttaaaaggttgtccttttatggtttccagAGGAAAGATAACTTTGAATCTGTCGTAATGGAGCATCTAAGAATGAATGGGGCATATTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATACCG---
                              || | || || ||       | |   || ||  |||     ||  | || |||   |    |  | |  ||| ||  || | ||| |||||| |  ||||| ||||| || ||||| ||||||||||||||||| ||||| |||||| | |||||||| ||  | || |  |||||       |   
gtacctagaaactgtatagaacctttgctcgttttctctgtttatgtcactgtgattgtatagcttatgttcttcttttcaattgctttttgaattttatttaat--ttgctagaagAAAGAGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCATACTGGGGACTCACCACTCTCGACTTACTTGACAAGCTCGGCTGTGTTT

upper sequence: GLYMA05G28630.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G12070.1 (Arabidopsis thaliana), 3'ss of exon 1
-----------------------------gtgtgctgtgcttcccatttatac-------atggatgccttgcaaact----cttctttaatgcttaaaaggttgtccttttatggtttccagAGGAAAGATAACTTTGAATCTGTCGTAATGGAGCATCTAAGAATGAATGGGGCATATTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATACCG
                              |      ||||     |||||         ||  |   |||  ||| |    |||  | | |  || ||  | | | | | |    || | |||  ||||| |  ||||| ||||| || ||||| ||||| ||||||||||| |||||||||||| | ||||| |||| | | || |  ||||||  | | |
gtactagtatataaagctatatcatccattttcctcatgctcattgtttatgtcactataattaacaacttaaaaatttcccctttctcacttttttaattggttttcatattaacttgctagAAAAAAGAGAGTTTTGAGTCTGTGGTTATGGATCATCTGAGAATGAATGGTGCATATTGGGGACTAACCACACTGGCTTTACTCGACAAGCTTGGTTCTG

upper sequence: GLYMA05G28630.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv15s0024g00080.t01 (Vitis vinifera), 3'ss of exon 2
gtgtgctgtgcttcccatttatacatggatgccttgcaaactc--ttctttaatgcttaaaaggttgtcc-----ttttatggtttccagAGGAAAGATAACTTTGAATCTGTCGTAATGGAGCATCTAAGAATGAATGGGGCATATTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATACCG
||| | | || ||       |  ||   || | || |    |   |  |   ||  |||   |  | ||      |||| | ||   |||||||| || || |||||||| || || ||||| ||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||  | |  |
gtgcgttttgttttattagcaatcaattattcttttcttttttggtcatgccatatttagttgaatttcagatgattttgttgtactcagAGGAAGGACAATTTTGAATCAGTGGTGATGGAACATCTAAGAATGAATGGGGCATACTGGGGACTGACTACTCTAGATCTTCTAGGAAAGCTGGACATGG

upper sequence: GLYMA05G28630.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0134g00150.t01 (Vitis vinifera), 3'ss of exon 2
gtgtgctgtgcttcccatttatacatggatgccttgcaaactcttctttaatgcttaaaaggttg--tccttttatggtttccagAGGAAAGATAACTTTGAATCTGTCGTAATGGAGCATCTAAGAATGAATGGGGCATATTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATACCG
||||| | |    |   |  ||         | |||     ||| |  |  |   |  ||  |||  |  ||||||  |   |||||||| ||| | |||||||| || ||||  |||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||  | |  |
gtgtgttttctaacagctgaattttcctcccctttgttggttctgcgatgttttgttgaattttgggtgattttattctactcagAGGAAGGATGATTTTGAATCAGTGGTAACAGAGCATCTAAGAATGAATGGAGCATACTGGGGATTGACCACTCTAGATCTTCTTGGAAAGCTGGAAATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgccttgcaaactcttctttaatgcttaaaaggttgtccttttatggtttccagAGGAAAGATAACTTTGAATCTGTCGTAATGGAGCATCTAAGAATGAATGGGGCATATTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATACCG
                 ctttaat  putative branch site (score: 4)
                                     tccttttat  putative PPT
                  tttaatgcttaaaa  TA-rich tract