1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caatgcatgtagacttggtgcagtttaaacaacttctgtcaaaacgcgtagtttggtgattttatttatatattggtgatgaatattcaatttaatacagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAGCTCTCCAACGTATTCAAAAGTTATCCATAGGCTACCTGTACCTTATTT
species | Glycine max |
transcript | GLYMA05G28400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAEST: gi|7146995|gb|AW508917.1|AW508917
genomic: CATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaacaaaaa ... tttaatacagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
EST: CATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaacaaaaa ... tttaatacagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
gcgtagtttggtgattttatttatatattggtgatgaatattcaatttaatacagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAGCTCTCCAACGTATTCAAAAGTTATCCATAGGCTACCTGTACCTTATTT
atttaat putative branch site (score: 4)
attttatttatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgcatgtagacttggtgcagtttaaacaacttctgtcaaaacgcgtagtttggtgattttatttatatattggtgatgaatattcaatttaatacagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAGCTCTCCAACGTATTCAAAAGTTATCCATAGGCTACCTGTACCTTATTT
- - gcatgta
- - - - - - - -tggtgca
- - - - - - - - - - - - - - - - -ttctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - -tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgatg