1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gttttcatgtgtttttttttaatttcagttgacatcggacatttttcaagttttgtggtttgtttttaatttcaagttttttaattgttgcttgttgcagTTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAATGGAGAATTTG
species | Glycine max |
transcript | GLYMA05G28150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAG TTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAAEST: gi|209706858|gb|BW661494.1|BW661494
genomic: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAGgtctgttttc ... cttgttgcagTTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAA
EST: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAG TTCTCAAGGGGATTTCTGATGGTATGTCACGGGGNNNNNNNGCGGAAGAAAEST: gi|208125185|gb|GD924695.1|GD924695
genomic: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAGgtctgttttc ... cttgttgcagTTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAA
EST: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAG TTCTCAAGGGGATTTCTGATGGTATGTCACGGGG-AAAAA-GCGGAAGAAAEST: gi|193553064|gb|FK507475.1|FK507475
genomic: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAGgtctgttttc ... cttgttgcagTTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAA
EST: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCTTCCGAG TTCTCAAGGGGATCTCTGATGGTATGTCAACGGGGEST: gi|193729388|gb|FK664278.1|FK664278
genomic: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAGgtctgttttc ... cttgttgcagTTCTCAAGGGGATTTCTGATGGTATGTCA-CGGGG
EST: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCTTCCGAG TTCTCAAGGGGGATCTCTGATGGTATGTCACGGGGGEST: gi|208286215|gb|GE086441.1|GE086441
genomic: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAGgtctgttttc ... cttgttgcagTTCTCAAGGGG-ATTTCTGATGGTATGTCACGGGGG
EST: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAG TTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAA
genomic: TGAAGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGATCGCCTCCGAGgtctgttttc ... cttgttgcagTTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAA
tcaagttttgtggtttgtttttaatttcaagttttttaattgttgcttgttgcagTTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAATGGAGAATTTG
ttttaat putative branch site (score: 3)
tttgtttttaatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcatgtgtttttttttaatttcagttgacatcggacatttttcaagttttgtggtttgtttttaatttcaagttttttaattgttgcttgttgcagTTCTCAAGGGGATTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAATGGAGAATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - tcatgtg
- - - - - - - - - - - - - - -tgacatc
- - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg