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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaactttcaactttctccatttttttttcagttttgagaattcgaccatactagcgtgcgtgaaggaagaagaaagaaagaagaatgacttggttggtgctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAG

Basic information

species Glycine max
transcript GLYMA05G27900.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27900.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 1
----gtcaactttcaactttctccatttttttttcagttttgagaattcgaccatactagcgtgcgtgaaggaagaagaaagaaagaagaatgacttggttggtgctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAG
         ||||| | |||     ||||||||||  |||| | | ||              |   |||     || |||   |                      | ||||||||  |||| |||||||||||||| |||||||||||||| ||||| ||||| || ||||| |||||||| |||||
gtaaagttgctttcgatttttcaattttttttttcgatttttaaatttt-------------tttttgagacttgatgaatcgag---------------------tattgcagTTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047913|gb|CA784554.1|CA784554
EST:     CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAG                         TTTGAAGGTGAGCACAAGGAGAGTTTTTATTGGGGAACTTATCGTCCTCAC
genomic: CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaactttc ... gctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCAC
EST: gi|5058372|gb|AI736848.1|AI736848
EST:     CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAG                         TTTGAAGGTGAGCACAAGGAGAGTTTGTAT
genomic: CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaactttc ... gctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTAT
EST: gi|209703431|gb|BW678246.1|BW678246
EST:     CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAG                         TTTGAAGGTGAGCACAAGGAGAGTTTCTATTGGGGAACTTATCGTCCTCAC
genomic: CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaactttc ... gctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCAC
EST: gi|254323178|gb|GR835786.1|GR835786
EST:     CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAG                         TTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCAC
genomic: CTCGCGCCGTCACGCCATTTCCCGCGCCAAAGATAATGGACCTTCCTCAGgtcaactttc ... gctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtgcgtgaaggaagaagaaagaaagaagaatgacttggttggtgctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAG
                   aaagaaa  TA-rich tract