1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ctcacttggtgggaatcttgtccaatgaatcaccctctttttaatgaattggattggatgactactacatttttttatacttctgttttttcttgtgaagGTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGAAGTCAGCTATTGGTGCTATATTCTTGAAGCAACCTGTTTCTTGTGACTT
species | Glycine max |
transcript | GLYMA05G27240.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCACTCCTCCCCATCCCCCCAAGAAGCTTCTCATTAAGTTCCACAAAG GTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGAEST: gi|193581471|gb|FK538258.1|FK538258
genomic: AGCCACTCCTCCCCATCCCCCCAAGAAGCTCCTCATTAAGTTCCACAAAGgtacttcact ... tcttgtgaagGTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGA
EST: AGCCACTCCTCCCCATCCCCCCAAGAAGCTTCTCATTAAGTTCCACAAAG GTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATEST: gi|209698238|gb|BW667541.1|BW667541
genomic: AGCCACTCCTCCCCATCCCCCCAAGAAGCTCCTCATTAAGTTCCACAAAGgtacttcact ... tcttgtgaagGTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAAT
EST: AGCCACTCCTCCCCATCCCCCCAAGAAGCTTCTCATTAAGTTCCACAAAG GTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGA
genomic: AGCCACTCCTCCCCATCCCCCCAAGAAGCTCCTCATTAAGTTCCACAAAGgtacttcact ... tcttgtgaagGTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGA
gaattggattggatgactactacatttttttatacttctgttttttcttgtgaagGTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGAAGTCAGCTATTGGTGCTATATTCTTGAAGCAACCTGTTTCTTGTGACTT
catttttttatacttc CT-rich tract
atttttttatacttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcacttggtgggaatcttgtccaatgaatcaccctctttttaatgaattggattggatgactactacatttttttatacttctgttttttcttgtgaagGTATACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGAAGTCAGCTATTGGTGCTATATTCTTGAAGCAACCTGTTTCTTGTGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - tggtggg
- - - - - - - - - - -ccaatga
- - - - - - - - - - - - - - - caccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tggatga