1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttacaaacagccaattccatttttaagttgctagtatgttttttttttcttcctcttttggggtatcgagtagtaactcctcattgcttattttttttagATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCT
species | Glycine max |
transcript | GLYMA05G26930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTEST: gi|254342887|gb|GR859049.1|GR859049
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttagtttt ... ttttttttagATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGT
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTEST: gi|192299501|gb|FG992559.1|FG992559
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttagtttt ... ttttttttagATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGT
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTEST: gi|9205467|gb|BE331691.1|BE331691
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttagtttt ... ttttttttagATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGT
EST: AAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTEST: gi|192310277|gb|FK001947.1|FK001947
genomic: AAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttagtttt ... ttttttttagATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGT
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTEST: gi|5753720|gb|AI961007.1|AI961007
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttagtttt ... ttttttttagATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGT
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGT
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttagtttt ... ttttttttagATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGT
tttcttcctcttttggggtatcgagtagtaactcctcattgcttattttttttagATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCT
tagtaac putative branch site (score: 1)
ctcctcattgcttatt CT-rich tract
attgcttatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacaaacagccaattccatttttaagttgctagtatgttttttttttcttcctcttttggggtatcgagtagtaactcctcattgcttattttttttagATGGGAATTGTGGGAGAGAAACTAGACATAGATTTTGTGATCTCCACTGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - -cagccaa
- - - - - - - - - - - - - gttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctca