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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgacgtcgtttctgccagatttctatttccacttccgttagggtttcctttccaattactatttaattgataattatgataattgtaatattgtgatggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG

Basic information

species Glycine max
transcript GLYMA05G26630.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26630.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G14530.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------------------------------gtacgacgtcgtt---tctgccagatttctatttccacttccgttag-ggtttcctttccaattactatttaattgataattatgataattg--taatattgtgatggcttt-----agGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG
                                                          |  |   |||     |  | ||  |    || |  | ||  |  |   |||    |    | |  |  |||    | ||       |||||  |||  ||    | | |||     || ||||||| ||  |||||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||| || || || |
gtaccgtttacttgtccttctggttttgaattgggattggaattagggaatgtgttgatttggaatcggaagattaggcatttaaggatatgaaattgaggaaatagttgttgtatggagtgttgattagagaaaaaaaccctaaattgattaaagtttcatttgtttttttgtagATTCAATTGGTAAGAATACAATTGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGGTTAACGGAG

upper sequence: GLYMA05G26630.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 3'ss of exon 1
gtacgacgtcgtttctgccagatttctatttccacttccgttagggtttcctttccaattactatttaattgataattatgataattgtaatatt-gtgatggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG
                              | |  |||  ||  || ||   ||   || | | ||  || || | |  ||  |  | | || || |   | | ||||| ||||| | ||| |||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||| |
-----------------------------gtacgtttcgtttctggatttgatt--gatgattcttcgat-gaaattggtgtaacatcttatgtttgattttggtttagATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAG

upper sequence: GLYMA05G26630.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ23006 (Selaginella moellendorffii), 3'ss of exon 1
gtacgacgtcgtttctgccagatttctatttccacttccgttagggtttcctttccaattactatttaattgataattatgataattgtaatattgtgatggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG
                                    |    |  |  |   ||||   |  || ||  ||||||  ||  |  ||| ||     | |         || | ||| |  | || ||  |  |  | || || || ||||| |||||||||||||||||||| || || || |||||| |||| ||||| |
---------------------------------gtatggaatccgactagttttctggt--cttttctattgattcttg-gggaatcgtggcgattt--ctctcgcagATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACCACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193545595|gb|FK500798.1|FK500798
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTCCAATTAGTGCGAATACAATTG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTG
EST: gi|213600472|gb|DB970324.1|DB970324
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|254327807|gb|GR834772.1|GR834772
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|213593691|gb|DB971713.1|DB971713
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|209706563|gb|BW676111.1|BW676111
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|192324953|gb|FK015404.1|FK015404
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|5606771|gb|AI900869.1|AI900869
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|26047656|gb|CA784373.1|CA784373
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|213602225|gb|DB958485.1|DB958485
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
EST: gi|151408492|gb|EV278300.1|EV278300
EST:     TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTC                         GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG
genomic: TTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCgtacgacgtc ... atggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaattactatttaattgataattatgataattgtaatattgtgatggctttagGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG
              aattgat  putative branch site (score: 4)
     ttactatttaattgat  TA-rich tract