1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taagtgctgcaacgatcaatgcctgaagaattgaatgaagaaaaaaatgcttatgggtactgattgattcttcgttgtgtggtttgtgcagaaagttcagAAGGCTCTTCTGCAATCCGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG
species | Glycine max |
transcript | GLYMA05G26250.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACTCGCCGCTGCAAAGAAAGCAGTCACTCTCGCTGCTCGTCTCTGCCAGAAAGTTCAGEST: gi|192294187|gb|FG986276.1|FG986276
genomic: AACTCGCCGCTGCAAAGAAAGCAGTCACTCTCGCTGCTCGTCTCTG-C--------CAGgcaccccttc ... ga
EST: AACTCGCCGCTGCAAAGAAAGCAGTCACTCTCGCTGCTCGTCTCTGCCAGAAAGTTCGGEST: gi|192330285|gb|FK020570.1|FK020570
genomic: AACTCGCCGCTGCAAAGAAAGCAGTCACTCTCGCTGCTCGTCTCTGCC----A-----Ggcaccccttc ... ga
EST: AACTCGCCGCTGCAAAGAAAGCAGTCACTCTCGCTGCTCGTCTCTGCCAGAAAGTTCAGEST: gi|15813517|gb|BI785792.1|BI785792
genomic: AACTCGCCGCTGCAAAGAAAGCAGTCACTCTCGCTGCTCGTCTCTG-C--------CAGgcaccccttc ... ga
EST: AACTCGCCGCTGCAAAGAAAGCAGTCACTCTCGCTGCTCGTCTCTGCCAG AAGGCTCTTCTGCAATCCGATGTGCACTCAAAGTCAGACAAAAGTCCTGTC
genomic: AACTCGCCGCTGCAAAGAAAGCAGTCACTCTCGCTGCTCGTCTCTGCCAGgcaccccttc ... gaaagttcagAAGGCTCTTCTGCAATCCGATGTGCACTCAAAGTCAGACAAAAGTCCTGTC
aatgcttatgggtactgattgattcttcgttgtgtggtttgtgcagaaagttcagAAGGCTCTTCTGCAATCCGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG
attgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagtgctgcaacgatcaatgcctgaagaattgaatgaagaaaaaaatgcttatgggtactgattgattcttcgttgtgtggtttgtgcagaaagttcagAAGGCTCTTCTGCAATCCGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -gtgctgc
- - - - - - - - caatgcc
- - - - - - - - - - - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc