Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttattccttcctatccaattccctctcttctcctccaaattcgcctccgattcgagttcggaacttcagatttgcgaatcgtattcgtctcattttccaatttcggatcgttttgacctccttattgcgtgatttttgtttctgttttgtttaattaatctgttgcatgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG

Basic information

species Glycine max
transcript GLYMA05G26240.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26240.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s2207g00010.t01 (Vitis vinifera), 3'ss of exon 1
gtaagttttattccttcctatccaattccctctcttctcctccaaattcgcctccgattcgagttcggaacttcagatttgcgaatcgtattcgtctcattttccaatttcggatcgttttgacctccttattgcgtgatttttgtttctgttttgtttaattaatctgttgcatgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG
                                                                          | | ||    ||  |||| |||     ||| |||||   ||  |||  |     || ||  || |    || || || |||   ||| |   |||||   |   |||||||||||||||||| || || || ||||| |||||||| || || ||||||||||
-------------------------------------------------------------------------tataattaatgat--tattggtc---aattcgaattt--aattatttctatgattttgttttgtaaagcgtgatt-tggtttaaataagtgtgctgtttttt-ccgcagAGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393104|gb|EV262979.1|EV262979
EST:     GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAG                         AGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
genomic: GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGgtaagtttta ... catgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
EST: gi|213611573|gb|DB960853.1|DB960853
EST:     GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAG                         AGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
genomic: GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGgtaagtttta ... catgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
EST: gi|254340891|gb|GR854619.1|GR854619
EST:     GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAG                         AGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
genomic: GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGgtaagtttta ... catgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
EST: gi|298181983|gb|HO026158.1|HO026158
EST:     GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAG                         AGTTTAGATCTTTCGAGAATTGATCGGATTATTCGGTGCTCGCTGCGATCT
genomic: GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGgtaagtttta ... catgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
EST: gi|254346278|gb|GR859891.1|GR859891
EST:     GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAG                         AGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
genomic: GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGgtaagtttta ... catgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
EST: gi|213600098|gb|DB964304.1|DB964304
EST:     GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAG                         AGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
genomic: GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGgtaagtttta ... catgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
EST: gi|298168261|gb|HO014436.1|HO014436
EST:     GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAG                         AGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT
genomic: GGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGgtaagtttta ... catgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttattgcgtgatttttgtttctgttttgtttaattaatctgttgcatgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG
                                aattaat  putative branch site (score: 3)
           atttttgtttctgttt  TA-rich tract